View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17315_low_33 (Length: 236)

Name: NF17315_low_33
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17315_low_33
NF17315_low_33
[»] chr5 (1 HSPs)
chr5 (1-221)||(9605898-9606118)
[»] chr8 (13 HSPs)
chr8 (2-153)||(6449899-6450050)
chr8 (2-155)||(6456366-6456519)
chr8 (14-127)||(6320552-6320665)
chr8 (14-127)||(6331014-6331127)
chr8 (14-99)||(6390101-6390186)
chr8 (14-127)||(7458203-7458316)
chr8 (14-96)||(6273673-6273755)
chr8 (14-127)||(7470605-7470718)
chr8 (5-72)||(6262455-6262522)
chr8 (14-97)||(6409353-6409436)
chr8 (14-96)||(6369119-6369201)
chr8 (14-127)||(6287924-6288037)
chr8 (14-114)||(6423379-6423479)
[»] chr2 (1 HSPs)
chr2 (34-117)||(42689355-42689438)
[»] chr3 (1 HSPs)
chr3 (1-69)||(36745679-36745747)
[»] chr1 (1 HSPs)
chr1 (5-75)||(36926123-36926193)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9606118 - 9605898
Alignment:
Q  1 aacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606118 aacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagac 9606019  T
Q  101 gatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataagagttaaaattttgttatcaatttagcgaccaattttttaaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9606018 gatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataacagttaaaattttgttatcaatttagcgaccaattttttaaattg 9605919  T
Q  201 gccgctagattggtggagaac 221  Q
    |||||||||||||||||||||    
T  9605918 gccgctagattggtggagaac 9605898  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 6449899 - 6450050
Alignment:
Q  2 acatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacg 101  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||| || || || |    
T  6449899 acatagtcttggacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaagtcgaaggccgtgaggggaag 6449998  T
Q  102 atggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaat 153  Q
    | ||||||||||| |||||||||||  ||||| |||||||| | ||||||||    
T  6449999 agggatcctcaacagctaatcctctgaatcaaacaaacaatatgttatcaat 6450050  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 6456366 - 6456519
Alignment:
Q  2 acatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacg 101  Q
    ||||||||||| ||||||| |||||||||||||||||| || ||||||||||| |||||||||||||| || | | |||||||||| ||||| || || |    
T  6456366 acatagtcttgaacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatggggggaag 6456465  T
Q  102 atggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataa 155  Q
    | || |||||||| |||| ||||||  |||||||| ||||||| ||||||||||    
T  6456466 acgggtcctcaacagctagtcctctgaatcaagcagacaatttgttatcaataa 6456519  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 6320552 - 6320665
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 113  Q
    ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||| ||||  |||||||| || | |||||||||||    
T  6320552 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6320651  T
Q  114 cggctaatcctcta 127  Q
    | || | |||||||    
T  6320652 cagccactcctcta 6320665  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 6331014 - 6331127
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 113  Q
    ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||| ||||  |||||||| || | |||||||||||    
T  6331014 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6331113  T
Q  114 cggctaatcctcta 127  Q
    | || | |||||||    
T  6331114 cagccactcctcta 6331127  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 6390101 - 6390186
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggaga 99  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||| || || ||||| |||| |||||| || |||||||||||    
T  6390101 acccatgacttaatagcagcccatatctctagtccatcaacagcatatggataatcctctatcagaagacgcagaccatgtggaga 6390186  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 7458203 - 7458316
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 113  Q
    |||||||||||||||||| |||||||||| |||||||||   |||||||| |||||||| |||| ||| ||||  ||||||||||| | |||||||| ||    
T  7458203 acccatgacttaatagcagcccatatctctagtccatcagaagcataaggatagtcctctatcagaagtcgaacaccatgtggagaagctggatcctgaa 7458302  T
Q  114 cggctaatcctcta 127  Q
    | || | |||||||    
T  7458303 ctgccactcctcta 7458316  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 6273673 - 6273755
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgg 96  Q
    ||||||||||||||| || |||||||||| | ||||||| | ||||||||||||||||| |||| ||| |||||||| |||||    
T  6273673 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtgg 6273755  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 7470605 - 7470718
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 113  Q
    |||||||||||||||||| |||||||||| |||||||||    ||||||| |||||||| |||| ||| ||||  ||||||||||| | |||||||| ||    
T  7470605 acccatgacttaatagcagcccatatctctagtccatcagaaacataaggatagtcctctatcagaagtcgaacaccatgtggagaagctggatcctgaa 7470704  T
Q  114 cggctaatcctcta 127  Q
    | || | |||||||    
T  7470705 ctgccactcctcta 7470718  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 6262455 - 6262522
Alignment:
Q  5 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctc 72  Q
    |||||||| ||||||| ||||||||||||||| || || ||||||||||| ||||||||||| |||||    
T  6262455 tagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc 6262522  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 6409353 - 6409436
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgga 97  Q
    |||||||||||||||||| |||||||||| | |||||||   |||||||| || ||||| |||| ||| ||||  |||||||||    
T  6409353 acccatgacttaatagcagcccatatctctaatccatcagtagcataaggataatcctctatcaaaaggcgaacaccatgtgga 6409436  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 6369119 - 6369201
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgg 96  Q
    |||||||||||||||||| |||||||||| ||||||||    ||||| || || ||||| |||| |||||| || ||||||||    
T  6369119 acccatgacttaatagcagcccatatctctagtccatctgaagcatatggataatcctctatcagaagacgcagaccatgtgg 6369201  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 6287924 - 6288037
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 113  Q
    |||||||||||||| ||   ||||||||| | ||||||| | ||||||||||| || |  |||| ||| |||||||| ||||| || | |||||||||||    
T  6287924 acccatgacttaattgctgtccatatctctaatccatcagcagcataagggtaatcttttatcagaaggcgaaggccgtgtggggaagttggatcctcaa 6288023  T
Q  114 cggctaatcctcta 127  Q
    | || | |||||||    
T  6288024 cagccactcctcta 6288037  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 6423379 - 6423479
Alignment:
Q  14 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 113  Q
    ||||||| ||| |||||| |||||||||| ||||||||    |||||||| || ||||| |||| ||| |||| ||| ||||| || | |||||||||||    
T  6423379 acccatgtcttgatagcagcccatatctctagtccatccgaagcataaggataatcctcaatcaaaaggcgaatgccgtgtggtgaagctggatcctcaa 6423478  T
Q  114 c 114  Q
    |    
T  6423479 c 6423479  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 42689438 - 42689355
Alignment:
Q  34 ccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaacggc 117  Q
    ||||||||| | ||||||||| ||||||||||||||||| |||| ||||||||| || | ||| ||||||||||||||||||||    
T  42689438 ccatatctctaatccatcaacagcataagggtagtcctctatcagaagacgaagtccgtatggggacgatggatcctcaacggc 42689355  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 36745747 - 36745679
Alignment:
Q  1 aacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtc 69  Q
    |||||||||||  ||||||| ||||||||||||||||||||| | ||||||||| ||| ||||||||||    
T  36745747 aacatagtctttcacccatgccttaatagcatcccatatctctaatccatcaacagcaaaagggtagtc 36745679  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 36926193 - 36926123
Alignment:
Q  5 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgat 75  Q
    |||||||  ||||||| ||| || |||  ||| ||||| ||||||||||||||||||||||| ||||||||    
T  36926193 tagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgat 36926123  T

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