View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17315_low_34 (Length: 230)
Name: NF17315_low_34
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 32179197 - 32179100
Alignment:
| Q |
17 |
tattttacgccgacaatattgtttgtacagccattaaactattattacatgaataaagaa----taaaaagtttacttttgaaattgaaaagctactgaa |
112 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32179197 |
tattttacaccgacaatattgt----acagccattaaactattattacatgaataaagaataagtaaaaagtttacttttgaaattgaaaagctactgaa |
32179102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University