View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_6 (Length: 553)
Name: NF17315_low_6
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 41151989 - 41152526
Alignment:
| Q |
1 |
caagatgttctagtaagagtgcattcagaatgtttaactggggatatatttggatcagctcggtgtgactgtggccagcaactagatttggctatggaat |
100 |
Q |
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| T |
41151989 |
caagatgttctagtaagagtgcattcagaatgtttaactggggatatatttggatcagctcggtgtgactgtggccagcaactagatttggctatggaat |
41152088 |
T |
|
| Q |
101 |
tgattgaagaagctggaagaggagtaattgtttatcttagaggtcatgaaggaagaggcattgggttgggtcacaaacttcaagcctataacttgcaaga |
200 |
Q |
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| T |
41152089 |
tgattgaagaagctggaagaggagtaattgtttatcttagaggtcatgaaggaagaggcattgggttgggtcacaaacttcaagcctataacttgcaaga |
41152188 |
T |
|
| Q |
201 |
tcaaggtcgtgatacagtccaagcaaacatagatttagggttagctgttgatgctcgtgagtatggcattggtgcccaggtcagatcttttaatcacttt |
300 |
Q |
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| T |
41152189 |
tcaaggtcgtgatacagtccaagcaaacatagatttagggttagctgttgatgctcgtgagtatggcattggtgcccaggtcagatcttttaatcacttt |
41152288 |
T |
|
| Q |
301 |
cacttacattgtttgtgtgcttcaaatcaaataaagtatacgtatgattggatttctcaaattagtcaataaccgcatatggaa--nnnnnnnnnnnnnn |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |
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| T |
41152289 |
cacttacattgtttgtgtgcttcaaatcaaataaagtatacgtatgattggatttctcaaattagtcagtaattggatatggaatttaaaaaaaaaaaaa |
41152388 |
T |
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| Q |
399 |
nnctaaagttttacttgaatttttgttcgcgtatcttgcttggattgtataataagtttatcgcaaacactaagtgttgagaagtagagaattgcggatt |
498 |
Q |
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| T |
41152389 |
aactaaagttttacttgaatttttgttcgcgtatcttgcttggattgtataataagtttatcgcaaacactaagtgttgagaagtagagaattgcggatt |
41152488 |
T |
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| Q |
499 |
tcaattcgcctctcagcatatcaaatgtcgccgcaact |
536 |
Q |
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| T |
41152489 |
tcaattcgcctctcagcatatcaaatgtcgccgcaact |
41152526 |
T |
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