View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17315_low_7 (Length: 542)

Name: NF17315_low_7
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17315_low_7
NF17315_low_7
[»] chr7 (2 HSPs)
chr7 (1-395)||(12417445-12417839)
chr7 (484-542)||(12417298-12417356)
[»] chr8 (2 HSPs)
chr8 (84-148)||(13223967-13224031)
chr8 (17-50)||(30213771-30213804)
[»] scaffold0032 (1 HSPs)
scaffold0032 (17-50)||(78775-78808)
[»] chr4 (4 HSPs)
chr4 (17-50)||(18445336-18445369)
chr4 (15-50)||(19052738-19052773)
chr4 (15-50)||(22223463-22223498)
chr4 (15-60)||(39981249-39981294)
[»] chr1 (2 HSPs)
chr1 (15-60)||(12439926-12439971)
chr1 (15-50)||(12397235-12397270)
[»] chr2 (2 HSPs)
chr2 (22-62)||(14794468-14794508)
chr2 (15-50)||(8685016-8685051)
[»] chr5 (3 HSPs)
chr5 (15-50)||(22747821-22747856)
chr5 (15-60)||(32452513-32452558)
chr5 (16-48)||(22820785-22820817)
[»] chr6 (2 HSPs)
chr6 (17-50)||(20395346-20395379)
chr6 (15-55)||(28952698-28952738)
[»] chr3 (1 HSPs)
chr3 (15-51)||(20747321-20747357)


Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 12417839 - 12417445
Alignment:
Q  1 tatgtatatatacttgaaatcccttggaagtgcaagaggactggactacttctgaattgttgtgttttgtacttaatgtgctgcactcagactctacatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417839 tatgtatatatacttgaaatcccttggaagtgcaagaggactggactacttctgaattgttgtgttttgtacttaatgtgctgcactcagactctacatc 12417740  T
Q  101 agaatctgaatatcttagattctgattaggatgttaaactaaagaaaagtaaagccacaaaaagcttccccccacgcccaatatttacttataagtctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417739 agaatctgaatatcttagattctgattaggatgttaaactaaagaaaagtaaagccacaaaaagcttccccccacgcccaatatttacttataagtctta 12417640  T
Q  201 cagtaacttattttttcttgcattatgatcttcttaaaaaatttatcgaggtgaatgttgtattggagaacaattttgaaattgttgatatgagtgagga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12417639 cagtaacttattttttcttgcattatgatcttcttaaaaaatttatcgaggtgaatgttgtattggagaacaattttgaaattgttgatatgagtgacga 12417540  T
Q  301 atcataagctaattcataaaaatgagaaaggtacataggcactttgtaaggtgttaaatggtctacctttattttatgtgcataagggtgacatc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12417539 atcataagctaattcataaaaatgagaaaggtacataggcactttgtaaggtgttaaatggtctacctttattttatgtgtataagggtgacatc 12417445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 484 - 542
Target Start/End: Complemental strand, 12417356 - 12417298
Alignment:
Q  484 ccaacgaaactctatttatatatacatcttgcaaaaatataaactaaaatatgtatatg 542  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417356 ccaacgcaactctatttatatatacatcttgcaaaaatataaactaaaatatgtatatg 12417298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 13223967 - 13224031
Alignment:
Q  84 cactcagactctacatcagaatctgaatatcttagattctgattaggatgttaaactaaagaaaa 148  Q
    |||||||||||||||||||||| || ||||||||||||||||| ||| |||| ||| ||||||||    
T  13223967 cactcagactctacatcagaatatgtatatcttagattctgatcaggctgttcaaccaaagaaaa 13224031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 30213804 - 30213771
Alignment:
Q  17 aaatcccttggaagtgcaagaggactggactact 50  Q
    |||||||||||||||||||| |||||||||||||    
T  30213804 aaatcccttggaagtgcaaggggactggactact 30213771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 78808 - 78775
Alignment:
Q  17 aaatcccttggaagtgcaagaggactggactact 50  Q
    ||||||||||||||||||||||||||||||||||    
T  78808 aaatcccttggaagtgcaagaggactggactact 78775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 18445369 - 18445336
Alignment:
Q  17 aaatcccttggaagtgcaagaggactggactact 50  Q
    ||||||||||||||||||||||||||||||||||    
T  18445369 aaatcccttggaagtgcaagaggactggactact 18445336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 19052773 - 19052738
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactact 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  19052773 tgaaatcccttggaagtgcaaggggactggactact 19052738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 22223463 - 22223498
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactact 50  Q
    |||||||||||||||||||||||||||| |||||||    
T  22223463 tgaaatcccttggaagtgcaagaggacttgactact 22223498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 39981249 - 39981294
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactacttctgaattgt 60  Q
    |||||| ||||||||||||||| ||||||||||||| ||| |||||    
T  39981249 tgaaattccttggaagtgcaagtggactggactactcctggattgt 39981294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 12439926 - 12439971
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactacttctgaattgt 60  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||    
T  12439926 tgaaatcccttggaagtgcaagaggattggagtactcctgaattgt 12439971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 12397270 - 12397235
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactact 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  12397270 tgaaatcccttggaagtgcaaggggactggactact 12397235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 14794468 - 14794508
Alignment:
Q  22 ccttggaagtgcaagaggactggactacttctgaattgttg 62  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  14794468 ccttggaagtgcaaggggactggactacttccgaattgttg 14794508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 8685051 - 8685016
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactact 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  8685051 tgaaatcccttggaagtgcaaggggactggactact 8685016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 22747856 - 22747821
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactact 50  Q
    |||||||||||||||||||||| |||||||||||||    
T  22747856 tgaaatcccttggaagtgcaaggggactggactact 22747821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 32452513 - 32452558
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactacttctgaattgt 60  Q
    |||||||||||| ||||| ||| ||||||||||||||||| |||||    
T  32452513 tgaaatcccttgaaagtgtaaggggactggactacttctggattgt 32452558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 22820817 - 22820785
Alignment:
Q  16 gaaatcccttggaagtgcaagaggactggacta 48  Q
    |||||| ||||||||||||||||||||||||||    
T  22820817 gaaatctcttggaagtgcaagaggactggacta 22820785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 20395379 - 20395346
Alignment:
Q  17 aaatcccttggaagtgcaagaggactggactact 50  Q
    ||||||||| ||||||||||||||||||||||||    
T  20395379 aaatcccttagaagtgcaagaggactggactact 20395346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 28952698 - 28952738
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactacttctga 55  Q
    |||||| |||| |||||||||||||||||||||||| ||||    
T  28952698 tgaaattccttagaagtgcaagaggactggactactcctga 28952738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 20747321 - 20747357
Alignment:
Q  15 tgaaatcccttggaagtgcaagaggactggactactt 51  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  20747321 tgaaatcccttgaaagtgcaaggggactggactactt 20747357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University