View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17315_low_9 (Length: 451)
Name: NF17315_low_9
Description: NF17315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17315_low_9 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 33841440 - 33841006
Alignment:
| Q |
1 |
ctccaagaaattatttaactaaacacagattttcaactctttctctcaatgacaaaatccactagtcattcttctccgttctacacatcgttgatttctt |
100 |
Q |
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| T |
33841440 |
ctccaagaaattatgcaactaaacacagattttcaactctttctctcaatgacaaaatccactagtcattcttctccgttctacacattgttgatttctt |
33841341 |
T |
|
| Q |
101 |
tatttccaaaatcttaaaaaacaagatttattgacaacatatttcgactaaccattgattcatattttctcggagaagatcatgaaaagaaattatcaac |
200 |
Q |
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| T |
33841340 |
tatttccaaaatcttaaaaaacaagatttattgacaacatatttcgactaaccattgattcatattttcttggagaagatcatgaaaagaaattatcaac |
33841241 |
T |
|
| Q |
201 |
tcttttagaagtagtaattaaggagctttgtacaatagggaagatcacgagaaagggaaagggaaaggcaaatggaacctcaaaatccagccttcgaatt |
300 |
Q |
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| T |
33841240 |
tcttttagaagtagtaattaaggagctttgtacaatagggaagatcacgagaaagggaaagggaaaggcaaatggaacctcaaaatccagccttcgaatt |
33841141 |
T |
|
| Q |
301 |
aacaagacttaatgtagatgatgataagcttgtctgaatgattcatcaaggtctattaaaaagagttagtatgaaagatgaagcaatggtaagcattatc |
400 |
Q |
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| T |
33841140 |
aacaagacttaatgtagaagatgataagcttgtctgaatgattcatcaaggtctattaaaaagagttagtatgaaagatgaagcaatggtaagcattatc |
33841041 |
T |
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| Q |
401 |
aacaactatgtaaaatatattaaatttggccctatg |
436 |
Q |
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| T |
33841040 |
aacaactatgt-aaatatattaaatttggccctatg |
33841006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 220 - 365
Target Start/End: Complemental strand, 39636174 - 39636028
Alignment:
| Q |
220 |
aaggagctttgtacaatagggaagatcacgagaaagggaaagggaaaggca-aatggaacctcaaaatccagccttcgaattaacaagacttaatgtaga |
318 |
Q |
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| T |
39636174 |
aaggaactttgtacaaaatggaagatcaagggaaagggaaagggaaagggataatggaatctcaagattcaggaactgaattaacagcacttattgtaga |
39636075 |
T |
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| Q |
319 |
tgatgataagcttgtctgaatgattcatcaaggtctattaaaaagag |
365 |
Q |
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| T |
39636074 |
tgatgataagcttgttcgaatgattcatcaaggtctattgaaaagag |
39636028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 384
Target Start/End: Original strand, 160130 - 160242
Alignment:
| Q |
272 |
atggaacctcaaaatccagccttcgaattaacaagacttaatgtagatgatgataagcttgtctgaatgattcatcaaggtctattaaaaagagttagta |
371 |
Q |
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| T |
160130 |
atggaacctcaaaattcaggatccgaattaacaacacttattgtagatgatattaagcttgttcgaattagtcatcaaggtctattgaaaagagctggtg |
160229 |
T |
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| Q |
372 |
tgaaagatgaagc |
384 |
Q |
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| T |
160230 |
tgaaaaatgaagc |
160242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 23348739 - 23348607
Alignment:
| Q |
253 |
aagggaaagggaaag-gcaaatggaacctcaaaatccagccttcgaattaacaagacttaatgtagatgatgataagcttgtctgaatgattcatcaagg |
351 |
Q |
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||||||||||||||| || ||||||||||||||| ||| | |||||||||| ||||| || |||| ||| ||||||||| ||||||||||||||| |
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| T |
23348739 |
aagggaaagggaaagagcttatggaacctcaaaattcaggatccgaattaacataacttattgaagattatgttaagcttgttcaaatgattcatcaagg |
23348640 |
T |
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| Q |
352 |
tctattaaaaagagttagtatgaaagatgaagc |
384 |
Q |
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| T |
23348639 |
tctattgaaaagagctggtgtgaaaaatgaagc |
23348607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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