View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_high_1 (Length: 577)
Name: NF17316_high_1
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 10 - 562
Target Start/End: Original strand, 32671111 - 32671663
Alignment:
| Q |
10 |
attatactggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttcacttttccaatctccatccttaaatgtcctctttcccatttattgc |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32671111 |
attacactggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttcacttttccaatctccatccttaaatgtcctctttcccatgtattgc |
32671210 |
T |
|
| Q |
110 |
tttgtataccctctctctattgtttgggaatcgaggctgaggatatattttaaataaataaacctcactcctcaatctgctgagacacctattacaaaag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
32671211 |
tttgtataccctctctctattgtttgggaatcgaggctgaggatatattttaaataaataaacctcgctcctcaacctgttgagacacctattacaaaag |
32671310 |
T |
|
| Q |
210 |
ataaaactgtaagggcatacataagatccaaagcgaacaatacctcataacgtggtgttgtagacttgagagccgacaaatccttagtcccttagcctta |
309 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32671311 |
ataaaactgtgagggcatacataagatccaaagcgaacaatatctcataacgtggtgttgcagacttgagagccgacaaatccttagtcccttagcctta |
32671410 |
T |
|
| Q |
310 |
actggaggttacggttttgcttagattgtttaataaacgtcgctcacactcccctatccaatgaggtgccttttagaaaggataaaccgtgagagcttta |
409 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671411 |
actggaggctacggttttgcttagactgtttaataaacgtcgctcacactcccctatccaatgaggtgccttttagaaaggataaaccgtgagagcttta |
32671510 |
T |
|
| Q |
410 |
catacaagacttaaagtcgacaattaatatcacgaaaatgtggtgtcgtgcactcgaagacgaagttggtgaaggtcaaaatagtgtagtagttaaatat |
509 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671511 |
catacaagacctaaagccgacaattaatatcacgaaaatgtggtgtcgtgcactcgaagacgaagttggtgaaggtcaaaatagtgtagtagttaaatat |
32671610 |
T |
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| Q |
510 |
caaagattatttgattcttgtatgatgattgttctgttccattgttcttcaat |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32671611 |
caaagattatttgattcttgtatgatgattgttctgtttcattgttcttcaat |
32671663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 45505437 - 45505392
Alignment:
| Q |
18 |
ggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttc |
63 |
Q |
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| T |
45505437 |
ggtcgagatgaattagtgaaaaacatttcgctatacatagcatttc |
45505392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 44533198 - 44533145
Alignment:
| Q |
10 |
attatactggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttc |
63 |
Q |
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|||| |||||||| |||||||||||||||||||||| |||| |||||||||||| |
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| T |
44533198 |
attacactggtcgggatgaattcgtgaaaaacattttgctatacatagcatttc |
44533145 |
T |
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