View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_high_11 (Length: 350)
Name: NF17316_high_11
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 7973929 - 7974253
Alignment:
| Q |
12 |
atcatgtgattccggcgtggtttattgcgattgttgatgcgaaggttggtgatgctgcggcgaggaggaagattgtgatgcaggcggcgaaggtgacagc |
111 |
Q |
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| T |
7973929 |
atcatgtgattccggcgtggtttattgcgattgttgatgcgaaggttggtgatgctgcggcgaggaggaagattgtgatgcaggcggcgaaggtgacggc |
7974028 |
T |
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| Q |
112 |
gaaggaggcggtaagattaggaatcattgactcggcgcatgatagtgctgaggaaacggttaaggctgcggttgagttgggtggtgatttggtgaagcgt |
211 |
Q |
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| T |
7974029 |
gaaggaggcggtgagattggggattgttgactcggcgcatgatagcgtggaggaaacggttaaggctgcggttgaattgggtggtaatttggtgaaacgt |
7974128 |
T |
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| Q |
212 |
ggatgggatggacacgtgtatgctgagaataggaagaagtttttgggtcatgtggttaaggctgttggagatgttagtgagaggaatattgaatccaaac |
311 |
Q |
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| T |
7974129 |
ggatgggatggacacgtgtatgctgagaataggaagaagtttttgggtcatgtggttaaggctgttggagatgttagtgagaggaatattgaatccaaac |
7974228 |
T |
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| Q |
312 |
tttagtgattttaaatttgggtttg |
336 |
Q |
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| T |
7974229 |
tttagtgactttaaatttgtgtttg |
7974253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 7966948 - 7966695
Alignment:
| Q |
12 |
atcatgtgattccggcgtggtttattgcgattgttgatgcgaaggttggtgatgctgcggcgaggaggaagattgtgatgcaggcggcgaaggtgacagc |
111 |
Q |
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| T |
7966948 |
atcatgttattccggcatggtttgttgctgttgttgaagcaaaggttggtgatgcgttggcaatgaagaggattgtgacggaggcggagaaggtgacggc |
7966849 |
T |
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| Q |
112 |
gaaggaggcggtaagattaggaatcattgactcggcgcatgatagtgctgaggaaacggttaaggctgcggttgagttgggtggtgatttggtgaagcgt |
211 |
Q |
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| T |
7966848 |
tgaggaggcggtgagattggggatcgttgactcggcgcatgatagcgttgaggaaacggttaaggctgcggttgaattgagcggtgatttggtgaagcgt |
7966749 |
T |
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| Q |
212 |
ggatgggatggacacgtgtatgctgagaataggaagaagtttttgggtcatgtg |
265 |
Q |
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| T |
7966748 |
ggattgaatggagacgtgtatgctgagaataggaagaagcttttgggtcatgtg |
7966695 |
T |
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