View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_high_13 (Length: 272)
Name: NF17316_high_13
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 33119954 - 33120190
Alignment:
| Q |
18 |
ataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctt |
117 |
Q |
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| T |
33119954 |
ataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacaccctt |
33120053 |
T |
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| Q |
118 |
taaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatcctttttatctgtcatagaacttcttgg |
217 |
Q |
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| T |
33120054 |
taaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatcctttttatctgtcatagaacttcttgg |
33120153 |
T |
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| Q |
218 |
gactgcatggacattcctggcttttggagtaattagt |
254 |
Q |
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| T |
33120154 |
gactgcatggacattcctggcttttggagtaattagt |
33120190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 33116784 - 33116924
Alignment:
| Q |
60 |
ttcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacag |
159 |
Q |
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| T |
33116784 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
33116883 |
T |
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| Q |
160 |
tgtgggtctctaacctcattgtttctcaatcctttttatct |
200 |
Q |
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| T |
33116884 |
tttggatctcaaaccttattgtttctcaatcctttttatct |
33116924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 21492025 - 21491884
Alignment:
| Q |
49 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagc |
148 |
Q |
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| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
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| Q |
149 |
atcaacaacagtgtgggtctctaacctcattgtttctcaatc |
190 |
Q |
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| T |
21491925 |
atcaacaacagtgtgggtttccaaccttgttgtttctcaatc |
21491884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
58 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaaca |
155 |
Q |
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| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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