View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_high_23 (Length: 205)
Name: NF17316_high_23
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 29722795 - 29722648
Alignment:
| Q |
28 |
agtatagttgtatgaatgttatttgagagaaaatgtgattgttgtgaatcaccattttaactttgtgtttcttgacctcctgatatctaaaatgctcagc |
127 |
Q |
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| T |
29722795 |
agtatagttgtatgaatgttatttgagagaaaatgtgattgttgtgaatcaccattttaactttgtgtttcttgacctcctgatatctaaaatgctcagc |
29722696 |
T |
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| Q |
128 |
tacttcataaatttgagtttttcagctacttcacttttctagtataat |
175 |
Q |
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| T |
29722695 |
tacttcataaatttgagtttttcagctacttcacttttctagtataat |
29722648 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 37166119 - 37166204
Alignment:
| Q |
58 |
aaatgtgattgttgtgaatcaccattttaactttgtgtttcttgacctcctgatatctaaaatgctcagctacttcataaatttgagtttt |
148 |
Q |
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| T |
37166119 |
aaatatgattgttgtgaatcaccattttaactttgtatttcttgacat----gta-ctaaaatgctctgctacttcataaatttaagtttt |
37166204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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