View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_high_6 (Length: 396)
Name: NF17316_high_6
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 674744 - 674928
Alignment:
| Q |
13 |
gcacagactctgtcatcatcattatttcattcaataatctnnnnnnntccaaggataaaatcgtaattcttcatctcaaaattcatagagcgggagttag |
112 |
Q |
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| T |
674744 |
gcacagactctgtcatcatcattatttcattcaataatataaaaaaatccaaggttaaaatcgtaattcttcatctcaaaattcatagagcgggaattag |
674843 |
T |
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| Q |
113 |
agccgttgcttctcaattcaatgaaattttcgcgccaaattttcatttcccacttgccctgcccgtaaattctcggtcagcccct |
197 |
Q |
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| T |
674844 |
agccgttgcttctcaattcaatgaaattttcgcgccaaattttcatttcccacttgccctgcccgtaaattctcggtcagaccct |
674928 |
T |
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Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 675045 - 675119
Alignment:
| Q |
304 |
aagaaagacaacaacctaagacaaacccttttaccttattccttgttcttcttcttcattattctcaagcatcaa |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
675045 |
aagaaagacaacaacctaagacaaacccttttaccttattccttgttcttcttcttcattattctcaagcatcaa |
675119 |
T |
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