View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_high_8 (Length: 364)
Name: NF17316_high_8
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 1487869 - 1487529
Alignment:
| Q |
17 |
gatcaaacatactaatttgataagtgaatcatcattcaaaggcaaggagtttgagttaatcaaagttgaaacaaaataaacgagttttggtaaatatatc |
116 |
Q |
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| T |
1487869 |
gatcaaatatactaatttgataagtcaatcatcattcaaaggcaaggagtttgagttaatcaaagttgaaacaaaataaacgagttttggtaaatatatc |
1487770 |
T |
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| Q |
117 |
actttacatgtattgagaaatttttcattctgcaatctaacaaaacacaaa--gaagcttcaattttttatctaacaaaatactagcaaaaatttaatat |
214 |
Q |
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| T |
1487769 |
actttacatgtattgagaaatttttcattctgcaatctaacaaaacacaaacagaagcttcaattttttatctaacaaaatactagcaaaaacttaatat |
1487670 |
T |
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| Q |
215 |
tttgatctaacaaaaatatttaacctcaactaacgttgaaaaatgatgcagagtaacaaatgttctgatcctcaaaggactaattaataacataggtcgc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1487669 |
tttgatctaacaaaaatatttaacctcaactaacgttgaaaaatgatgcagagtaacaaatgttctgatcctcaaaggactaattaataacataggtcgc |
1487570 |
T |
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| Q |
315 |
aaaattaggccaacgtctaaaacttatctatgaaacaaatt |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1487569 |
aaaattaggccaacgtctaaaacttatctatgaaacaaatt |
1487529 |
T |
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