View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17316_low_12 (Length: 349)

Name: NF17316_low_12
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17316_low_12
NF17316_low_12
[»] chr3 (8 HSPs)
chr3 (1-335)||(7498915-7499249)
chr3 (114-184)||(14970671-14970741)
chr3 (114-195)||(17249499-17249579)
chr3 (114-196)||(18126458-18126540)
chr3 (114-195)||(7799358-7799439)
chr3 (114-163)||(5199152-5199201)
chr3 (114-195)||(13145153-13145234)
chr3 (114-195)||(17900826-17900907)
[»] scaffold0080 (1 HSPs)
scaffold0080 (112-195)||(45405-45488)
[»] chr7 (7 HSPs)
chr7 (114-232)||(13662430-13662548)
chr7 (115-195)||(13125778-13125858)
chr7 (114-184)||(16314291-16314361)
chr7 (114-184)||(10652852-10652922)
chr7 (114-195)||(9165565-9165646)
chr7 (122-322)||(9879974-9880174)
chr7 (120-184)||(14141914-14141978)
[»] chr1 (6 HSPs)
chr1 (114-184)||(17715868-17715938)
chr1 (114-195)||(22127451-22127532)
chr1 (120-195)||(21210512-21210587)
chr1 (112-183)||(34523693-34523764)
chr1 (114-163)||(19164434-19164483)
chr1 (40-76)||(23978270-23978306)
[»] chr8 (6 HSPs)
chr8 (114-195)||(20376593-20376674)
chr8 (114-195)||(21294319-21294400)
chr8 (273-327)||(14977955-14978009)
chr8 (114-184)||(22465915-22465985)
chr8 (112-190)||(24589394-24589472)
chr8 (40-76)||(16400880-16400916)
[»] chr4 (3 HSPs)
chr4 (115-184)||(14008603-14008672)
chr4 (114-195)||(14907790-14907871)
chr4 (114-195)||(11534445-11534526)
[»] scaffold0004 (3 HSPs)
scaffold0004 (120-194)||(6547-6621)
scaffold0004 (122-195)||(4134-4207)
scaffold0004 (122-195)||(11291-11364)
[»] scaffold0863 (1 HSPs)
scaffold0863 (114-195)||(2215-2296)
[»] scaffold0738 (1 HSPs)
scaffold0738 (114-195)||(6606-6687)
[»] scaffold0262 (1 HSPs)
scaffold0262 (114-195)||(10881-10962)
[»] scaffold0193 (1 HSPs)
scaffold0193 (114-195)||(10833-10914)
[»] scaffold0084 (1 HSPs)
scaffold0084 (114-195)||(43401-43482)
[»] scaffold0047 (1 HSPs)
scaffold0047 (120-184)||(4411-4475)
[»] scaffold0594 (1 HSPs)
scaffold0594 (121-195)||(1028-1102)
[»] chr6 (5 HSPs)
chr6 (114-180)||(22810873-22810939)
chr6 (120-195)||(16882145-16882220)
chr6 (114-184)||(19445848-19445918)
chr6 (122-195)||(17613267-17613340)
chr6 (114-195)||(20034672-20034753)
[»] chr2 (5 HSPs)
chr2 (114-184)||(24721311-24721381)
chr2 (114-195)||(28705966-28706047)
chr2 (114-195)||(21166704-21166785)
chr2 (114-195)||(24809131-24809212)
chr2 (114-195)||(28726074-28726155)
[»] scaffold0379 (1 HSPs)
scaffold0379 (114-195)||(3265-3346)
[»] scaffold0315 (1 HSPs)
scaffold0315 (114-195)||(4427-4508)
[»] scaffold0175 (1 HSPs)
scaffold0175 (114-183)||(7944-8013)
[»] chr5 (5 HSPs)
chr5 (114-195)||(23484122-23484203)
chr5 (114-195)||(24942510-24942591)
chr5 (120-184)||(21203727-21203791)
chr5 (114-195)||(13529232-13529313)
chr5 (114-195)||(19468832-19468913)
[»] scaffold0269 (1 HSPs)
scaffold0269 (114-163)||(22856-22905)
[»] scaffold0249 (1 HSPs)
scaffold0249 (114-195)||(9738-9819)
[»] scaffold0217 (1 HSPs)
scaffold0217 (114-163)||(12725-12774)
[»] scaffold0021 (1 HSPs)
scaffold0021 (122-195)||(5447-5520)
[»] scaffold0018 (1 HSPs)
scaffold0018 (114-195)||(1075-1156)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 7499249 - 7498915
Alignment:
Q  1 tggatgaagctctaagtggtgatggctgtatcatagcattgcatgaagaactgaatcaattccaaataaatgatgttggggatttggttccaaggtcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  7499249 tggatgaagctctaagtggtgatggctgtatcatagcattgcatgaagaactgaatcaattccaaataaatgattttggggatttggttccatggtcaat 7499150  T
Q  101 aagctagaatgtcattgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaagactct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7499149 aagctagaatgtcattgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaagactct 7499050  T
Q  201 aatatgcaagaaggcattgacttcgctgaaacccatgcacatgttgctagactaaaagcaattagactgttattatcacatgttgttaatcatgatatca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7499049 aatatgcaagaaggcattgacttcgctgaaacccatgcacatgttgctagactaaaagcaattagactgttattatcacatgttgttaatcatgatatca 7498950  T
Q  301 tcatacattaaatggatgttaaaagtggttttctt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  7498949 tcatacattaaatggatgttaaaagtggttttctt 7498915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 14970741 - 14970671
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||||||||||| || | |||||||||||||||    
T  14970741 attggaacaaaatgggtattcagaaacaagttgaatgaacaaagtgaagtagtcataaacaaagctagact 14970671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 17249499 - 17249579
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| ||||||||||| ||||||||| || ||||||||||||||||| || |||||||    
T  17249499 attggaacaaaatgggtattcagaaacaagttgaatgaac-aagtgaagtagtcagaaacaaagctagacttgttgcacaag 17249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 18126458 - 18126540
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaaga 196  Q
    ||||| |||||||||||||||| ||||| ||||||||||||| |||| ||    ||||||||||| ||||| || ||||||||    
T  18126458 attggaacaaaatgggtgttcagaaacaagttgaatgaacaaggtgatgtaaccagaaacaaagccagacttgttgcacaaga 18126540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 7799358 - 7799439
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||||| |||||    ||||||||||||||||| || |||||||    
T  7799358 attggaacaaaatgggtattcagaaacaagctgaatgaacaaagagaagtaaccagaaacaaagctagacttgttgcacaag 7799439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 5199201 - 5199152
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagt 163  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||||||    
T  5199201 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagt 5199152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 13145234 - 13145153
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| |||||||    ||||||||||| ||||| || |||||||    
T  13145234 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggtgaagtaactagaaacaaagccagacttgttgcacaag 13145153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 17900826 - 17900907
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| | |||||    ||||||||||||||||| || |||||||    
T  17900826 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggagaagtaaccagaaacaaagctagacttgttgcacaag 17900907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 45488 - 45405
Alignment:
Q  112 tcattgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||| || ||||||||||||| ||| || |||||||    
T  45488 tcattggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtagtgagaaacaaagctatacttgttgcacaag 45405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 13662548 - 13662430
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaagactctaatatgcaagaag 213  Q
    ||||| ||||||||||| |||| ||||| ||| ||||||||| ||||||| || ||||||||||||||||| || |||||||  |  |||   |||||||    
T  13662548 attggaacaaaatgggtattcagaaacaagttaaatgaacaaggtgaagtagtcagaaacaaagctagacttgttgcacaaggttacaatcaacaagaag 13662449  T
Q  214 gcattgacttcgctgaaac 232  Q
    ||||||||| | |||||||    
T  13662448 gcattgactacactgaaac 13662430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 13125778 - 13125858
Alignment:
Q  115 ttgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    |||| ||||||||||| |||| ||||| ||||||||||||| |||||||  | ||||||||||||||||| || |||||||    
T  13125778 ttggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtaatcagaaacaaagctagacttgttgcacaag 13125858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 16314291 - 16314361
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||| ||||||||||| |||| |||||  |||||||||||| |||||||  | |||||||||||||||||    
T  16314291 attggaacaaaatgggtattcataaacaaattgaatgaacaaggtgaagtaatcagaaacaaagctagact 16314361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 10652922 - 10652852
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| ||||| |  | |||||||||| ||||||    
T  10652922 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaattaattagaaacaaagttagact 10652852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 9165646 - 9165565
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| | |||||    ||||||||||||||||| || |||||||    
T  9165646 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggagaagtaaccagaaacaaagctagacttgttgcacaag 9165565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 322
Target Start/End: Complemental strand, 9880174 - 9879974
Alignment:
Q  122 aaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaagactctaatatgcaagaaggcattgac 221  Q
    |||||| ||||||||||||| | | || || ||| ||  |||| ||||||||||| || |||| ||||| ||||||| ||||  ||| ||||  |||||     
T  9880174 aaaatgagtgttcaaaaacaagcttaacgagcaaggttgagtgataagaaacaaatctcgacttgtagctcaagactataatgagcaggaagatattgat 9880075  T
Q  222 ttcgctgaaacccatgcacatgttgctagactaaaagcaattagactgttattatcacatgttgttaatcatgatatcatcatacattaaatggatgtta 321  Q
    | | |||||||   ||||| | |||||| | || ||||||||||| | ||  | ||| ||||||||||||||| |||||   || || ||||||||||||    
T  9880074 tacactgaaacttttgcacttattgctaaattagaagcaattagattatttatgtcatatgttgttaatcatggtatcactttatatcaaatggatgtta 9879975  T
Q  322 a 322  Q
    |    
T  9879974 a 9879974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 14141978 - 14141914
Alignment:
Q  120 acaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||||||||| |||| ||||| ||||||||||||| |||||||    ||||||||||| |||||    
T  14141978 acaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtaaccagaaacaaagccagact 14141914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 17715938 - 17715868
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| ||||||| ||||||||||||||||||||    
T  17715938 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggtgaagtagtaagaaacaaagctagact 17715868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 22127532 - 22127451
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| |||||||||||||  ||||||  | ||||||||||||||||| || |||||||    
T  22127532 attggaacaaaatgggtattcataaacaagttgaatgaacaagatgaagtaattagaaacaaagctagacttgttgcacaag 22127451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 21210512 - 21210587
Alignment:
Q  120 acaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||||||||| |||| ||||| ||||||||||||| |||||||    ||||||||||||||||| || |||||||    
T  21210512 acaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtaactagaaacaaagctagacttgttgcacaag 21210587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 34523693 - 34523764
Alignment:
Q  112 tcattgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagac 183  Q
    ||||||| || ||||| || |||||||||| ||| |||||  || |||||||||||||||| ||||||||||    
T  34523693 tcattggaaccaaatgagttttcaaaaacaagttcaatgagaaaggtgaagtggtaagaaataaagctagac 34523764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 19164434 - 19164483
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagt 163  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||||||    
T  19164434 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagt 19164483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 23978270 - 23978306
Alignment:
Q  40 tgcatgaagaactgaatcaattccaaataaatgatgt 76  Q
    |||| |||||||| |||||||||||||||||||||||    
T  23978270 tgcaagaagaacttaatcaattccaaataaatgatgt 23978306  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 20376593 - 20376674
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| |||| |||||||| ||||||| || ||||||||||||||||| || |||||||    
T  20376593 attggaacaaaatgggtattcataaacaagttggatgaacaaggtgaagtagtcagaaacaaagctagacttgttgcacaag 20376674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 21294400 - 21294319
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||||||||| ||||||||||||| |||||||    ||||||||||| ||||| || |||||||    
T  21294400 attggaacaaaatgggtattcaaaaacaagttgaatgaacaaggtgaagtaaccagaaacaaagccagacttgttgcacaag 21294319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 14978009 - 14977955
Alignment:
Q  273 ttatcacatgttgttaatcatgatatcatcatacattaaatggatgttaaaagtg 327  Q
    |||||| ||||||| ||||||| ||||||| || |||||||| ||||||||||||    
T  14978009 ttatcatatgttgtcaatcatggtatcatcttatattaaatgaatgttaaaagtg 14977955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 22465915 - 22465985
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||| ||||||||||| || | ||||| | | ||||||||| ||||||| || |||||||||||||||||    
T  22465915 attggaacaaaatgggtatttagaaacaagctcaatgaacaaggtgaagtagtcagaaacaaagctagact 22465985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 24589472 - 24589394
Alignment:
Q  112 tcattgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagc 190  Q
    ||||||| ||||| || || |||||||||| | | |||||  || |||||||||||||||| ||||||||||| |||||    
T  24589472 tcattggaacaaagtgagttttcaaaaacaagatcaatgagaaaggtgaagtggtaagaaataaagctagacttgtagc 24589394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 16400916 - 16400880
Alignment:
Q  40 tgcatgaagaactgaatcaattccaaataaatgatgt 76  Q
    |||| |||||||| |||||||||||||||||||||||    
T  16400916 tgcaagaagaactcaatcaattccaaataaatgatgt 16400880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 14008672 - 14008603
Alignment:
Q  115 ttgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    |||| ||||||||||| |||| ||||| ||||||||||||| ||||||| || |||||||||||||||||    
T  14008672 ttggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtagtcagaaacaaagctagact 14008603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 14907790 - 14907871
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||||||    ||||||||||||||||| || |||||||    
T  14907790 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtaaccagaaacaaagctagacttgttgcacaag 14907871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 11534526 - 11534445
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| |||||| ||||||||| |||||   | ||||| ||| |||| ||| ||||||||||||||||||| | ||||||||    
T  11534526 attggaacaaaaggggtgttcataaacaaactcaatgagcaaggtgaggtgataagaaacaaagctagacttgcagcacaag 11534445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 6547 - 6621
Alignment:
Q  120 acaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaa 194  Q
    |||||||| || |||| ||||| ||||||||||||| ||||||| || ||||||||||||||||| || ||||||    
T  6547 acaaaatgagtattcagaaacaagttgaatgaacaaggtgaagtagtcagaaacaaagctagacttgttgcacaa 6621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 4207 - 4134
Alignment:
Q  122 aaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||||||| |||| ||||| ||||| ||||||| ||||||| || ||||||||||||||||| || |||||||    
T  4207 aaaatgggtattcataaacaagttgagtgaacaaggtgaagtagtcagaaacaaagctagacttgttgcacaag 4134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 11364 - 11291
Alignment:
Q  122 aaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||||||| |||| ||||| ||||| ||||||| ||||||| || ||||||||||||||||| || |||||||    
T  11364 aaaatgggtattcataaacaagttgagtgaacaaggtgaagtagtcagaaacaaagctagacttgttgcacaag 11291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 2215 - 2296
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| |||||||  || |||| ||||| ||||||||||||| ||||||| || ||||||||||||||||| || |||||||    
T  2215 attggaacaaaatttgtattcagaaacaagttgaatgaacaaggtgaagtagtcagaaacaaagctagacttgttgcacaag 2296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0738 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0738
Description:

Target: scaffold0738; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 6606 - 6687
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| ||||||| || |||| |||||||| ||| || |||||||    
T  6606 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtagtcagaagcaaagctatacttgttgcacaag 6687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 10962 - 10881
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| ||||||| ||  |||||||||| ||||| || |||||||    
T  10962 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtagtctgaaacaaagcaagacttgttgcacaag 10881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 10914 - 10833
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| ||||||| || ||||||||| ||||| | || |||||||    
T  10914 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtagttagaaacaaaactagatttgttgcacaag 10833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 43482 - 43401
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| || | ||||| ||||||||||||| ||||||| || ||||| ||||||||||| || |||||||    
T  43482 attggaacaaaatgggtatttagaaacaagttgaatgaacaacgtgaagtagtcagaaagaaagctagacttgttgcacaag 43401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 4475 - 4411
Alignment:
Q  120 acaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||||||||| ||||  |||| ||||||||||||| ||||||| || |||||||||||||||||    
T  4475 acaaaatgggtattcaggaacaagttgaatgaacaatgtgaagtagttagaaacaaagctagact 4411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 1028 - 1102
Alignment:
Q  121 caaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    |||||||||| |||| ||||| ||| ||||||||| ||||| | || ||||||||||||||||| || |||||||    
T  1028 caaaatgggtattcagaaacaagttaaatgaacaaggtgaattagtcagaaacaaagctagacttgttgcacaag 1102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 22810939 - 22810873
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagcta 180  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||  ||||||| || |||||||||||||    
T  22810939 attggaacaaaatgggtattcagaaacaagttgaatgaacagggtgaagtagtcagaaacaaagcta 22810873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 16882220 - 16882145
Alignment:
Q  120 acaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||||||||| |||| ||||| ||| ||||||||| |||||||   |||||||||||| ||||| || |||||||    
T  16882220 acaaaatgggtattcagaaacaagttcaatgaacaaggtgaagtaacaagaaacaaagccagacttgttgcacaag 16882145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 19445918 - 19445848
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||| ||||||||||| || | || || ||||||||||||| ||||||| || ||||||||| |||||||    
T  19445918 attggaacaaaatgggtattaataatcaagttgaatgaacaaggtgaagtagtcagaaacaaaactagact 19445848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 17613267 - 17613340
Alignment:
Q  122 aaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||||||| |||||||||| |||||| |||||| |||||||    ||||||||||| ||||| || |||||||    
T  17613267 aaaatgggtattcaaaaacaagttgaacgaacaaggtgaagtaactagaaacaaagccagacttgttgcacaag 17613340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 20034672 - 20034753
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| | |||||    ||||||||||||||||| || |||||||    
T  20034672 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggagaagtaaccagaaacaaagctagacttgttgcacaag 20034753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 24721381 - 24721311
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| ||||||| || ||||||||||| |||||    
T  24721381 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggtgaagtagtcagaaacaaagcaagact 24721311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 28705966 - 28706047
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| ||| ||||||||| ||||||||   ||||||||||| ||||| || |||||||    
T  28705966 attggaacaaaatgggtattcagaaacaagttaaatgaacaaggtgaagtgaccagaaacaaagccagacttgttgcacaag 28706047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 21166704 - 21166785
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| | |||||    ||||||||||||||||| || |||||||    
T  21166704 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggagaagtaaccagaaacaaagctagacttgttgcacaag 21166785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 24809131 - 24809212
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||| ||| |||| ||||| ||||||||||||| |||||||    ||||||||||| ||||| || |||||||    
T  24809131 attggaacaaaattggtattcagaaacaagttgaatgaacaaggtgaagtaactagaaacaaagccagacttgttgcacaag 24809212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 28726074 - 28726155
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| | |||||    ||||||||||||||||| || |||||||    
T  28726074 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggagaagtaaccagaaacaaagctagacttgttgcacaag 28726155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 3346 - 3265
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| |||||  |||| |||| ||||| ||||||||||||| |||||||  | ||||||||||||||||| || |||||||    
T  3346 attggaacaaagagggtattcagaaacaagttgaatgaacaaggtgaagtaatcagaaacaaagctagacttgttgcacaag 3265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 4508 - 4427
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| |||||||||||||||| ||||| ||||| ||||||| |||||||  | ||| ||||| ||||||| || |||||||    
T  4508 attggaacaaaatgggtgttcagaaacaagttgagtgaacaaggtgaagtaatcagagacaaatctagacttgttgcacaag 4427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 7944 - 8013
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagac 183  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||||||  | | ||||||||||||||    
T  7944 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtaatcataaacaaagctagac 8013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 23484203 - 23484122
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||||||    ||||||||||| ||||| || |||||||    
T  23484203 attggtacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagtaactagaaacaaagccagacttgtggcacaag 23484122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 24942591 - 24942510
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||||||||| | ||||||||||| | |||||    ||||||||||||||||| || |||||||    
T  24942591 attggaacaaaatgggtattcaaaaacaagctgaatgaacaaggagaagtaaccagaaacaaagctagacttgttgcacaag 24942510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 21203727 - 21203791
Alignment:
Q  120 acaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagact 184  Q
    ||||||||||| |||| ||||| ||| ||||||||| || |||| || |||||||||||||||||    
T  21203727 acaaaatgggtattcagaaacaagttaaatgaacaaggtaaagtagtcagaaacaaagctagact 21203791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 13529313 - 13529232
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| | |||||    ||||||||||||||||| || |||||||    
T  13529313 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggggaagtaaccagaaacaaagctagacttgttgcacaag 13529232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 19468832 - 19468913
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||||| | ||||||||||| | |||||    ||||||||||||||||| || |||||||    
T  19468832 attggaacaaaatgggtattcagaaacaagctgaatgaacaaggagaagtaaccagaaacaaagctagacttgttgcacaag 19468913  T

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Target: scaffold0269 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 22905 - 22856
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagt 163  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||||||    
T  22905 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagt 22856  T

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Target: scaffold0249 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 9738 - 9819
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||||||| |||| ||| | ||||||||||||| |||||||    ||||||||||| ||||| || |||||||    
T  9738 attggaacaaaatgggtattcagaaataagttgaatgaacaaggtgaagtaaccagaaacaaagccagacttgttgcacaag 9819  T

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Target: scaffold0217 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 12774 - 12725
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagt 163  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||| |||||||    
T  12774 attggaacaaaatgggtattcagaaacaagttgaatgaacaaggtgaagt 12725  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 5447 - 5520
Alignment:
Q  122 aaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||||||| |||| |||||  |||||||||||| |||||||  | ||||||||||||||| | || |||||||    
T  5447 aaaatgggtattcagaaacaaattgaatgaacaaggtgaagtaatcagaaacaaagctagatttgttgcacaag 5520  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 1075 - 1156
Alignment:
Q  114 attgggacaaaatgggtgttcaaaaacatgttgaatgaacaaagtgaagtggtaagaaacaaagctagactagtagcacaag 195  Q
    ||||| ||||||| ||| |||| ||||| ||||||||||||| |||||||    ||||||||||| ||||| || |||||||    
T  1075 attggaacaaaattggtattcagaaacaagttgaatgaacaaggtgaagtaactagaaacaaagccagacttgttgcacaag 1156  T

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