View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17316_low_13 (Length: 323)

Name: NF17316_low_13
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17316_low_13
NF17316_low_13
[»] chr4 (1 HSPs)
chr4 (16-308)||(54717986-54718278)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 54717986 - 54718278
Alignment:
Q  16 attagccataactgagtgttaccttgtttgcattaggaacaagttcctgcaaagctttcattctctcagcaattctttccctccgtagctgccatacata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54717986 attagccataactgagtgttaccttgtttgcattaggaacaagttcctgcaaagctttcattctctcagcaattctttccctccgtagctgccatacata 54718085  T
Q  116 aaaacaaaattaccaaattaccattgtactattacccttccacattgatccaaaaggaaacaaaagaaagcgattttaaaaacagaaacagaatgatagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54718086 aaaacaaaattaccaaattaccattgtactattacccttccacattgatccaaaaagaaacaaaagaaagcgattttaaaaacagaaacagaatgatagt 54718185  T
Q  216 aggcgtaggccctcccaaataagggtttatattctgttagccactgacaaacaaccgcattttctctgaaaaaattacacgttttggcgtttt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54718186 aggcgtaggccctcccaaataagggtttatattctgttagccactgacaaacaaccgcattttctctgaaaaaattacacgttttggcgtttt 54718278  T

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