View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_low_18 (Length: 250)
Name: NF17316_low_18
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_low_18 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 7973700 - 7973936
Alignment:
| Q |
14 |
ttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctc |
113 |
Q |
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| T |
7973700 |
ttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctc |
7973799 |
T |
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| Q |
114 |
ttcccatgcctaccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcggatcgtgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
7973800 |
ttcccatgcctaccatcgccgccgtcaccggtcacgcatccgccgcaggttacatcctcgcattatctcacgactacgtgttaatgcgatccgatcgtgg |
7973899 |
T |
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| Q |
214 |
atttctctacatgagtgagcttgacatcgatcatgtg |
250 |
Q |
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| T |
7973900 |
atttctctacatgagtgagcttgacatcgatcatgtg |
7973936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 7967189 - 7966966
Alignment:
| Q |
14 |
ttctccaacggttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctc |
113 |
Q |
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| T |
7967189 |
ttctccaacggctatgacatcgattgggcacaatctaacaaatctcgcttcatcctcatcgatgattcactccgttctgtcctttccgaactcatttctc |
7967090 |
T |
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| Q |
114 |
ttcccatgcctaccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcggatcgtgg |
213 |
Q |
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| T |
7967089 |
tccctatgcctaccattgccgttgtcaccggtcacgcctccaccgccggttacatcttcgcactttctcacgactactttttaatgagctccgatcatga |
7966990 |
T |
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| Q |
214 |
atttctctacatgagtgagcttga |
237 |
Q |
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| T |
7966989 |
atttctctacaagaacgagcttga |
7966966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 27962920 - 27962868
Alignment:
| Q |
137 |
gtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgacta |
189 |
Q |
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| T |
27962920 |
gtcaccggtaacgcctcagccgtaggttacatcctcgaattatctcacgacta |
27962868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 55819654 - 55819429
Alignment:
| Q |
24 |
gttacgacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctcttcccatgcc |
123 |
Q |
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|||| |||||||||||||||||| ||||||| || ||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||| |||||| || |
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| T |
55819654 |
gttatgacatcgactgggcacaaaacaacaactctcgcatgatcctcatcgacgatctcctctgtttcatcgtctccgaaattctctctcctcccatacc |
55819555 |
T |
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| Q |
124 |
taccatcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcggatcgtggatttctctac |
223 |
Q |
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|||||||||| |||||||||| | || || || | |||||||||||||| ||||||||| ||||| || ||| |||||| |||||| ||||||||||| |
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| T |
55819554 |
aaccatcgccgtcgtcaccggtaacgcctcagcagtaggttacatcctcggattatctcatgactacgtgttatagcgatcagatcgtagatttctctac |
55819455 |
T |
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| Q |
224 |
atgagtgagcttgacatcgatcatgt |
249 |
Q |
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| T |
55819454 |
atgagcgaacttgacagcgatcatgt |
55819429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 1068726 - 1068946
Alignment:
| Q |
29 |
gacatcgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctcttcccatgcctacca |
128 |
Q |
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|||||||| |||||| || ||||||| || ||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
1068726 |
gacatcgattgggcataaaacaacaactctcgcatgatcctcatcgacgatctcctccgttccatcgtctccaaacttctctctcttcccatgccaacca |
1068825 |
T |
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| Q |
129 |
tcgccgccgtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgactatgttttaatgcgatcggatcgtggatttctctacatgag |
228 |
Q |
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||| | |||||||||| | || || || |||||||||||||| ||||||||||||||| | ||| |||||| ||||||||||||||| ||||||| |
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| T |
1068826 |
tcgttgtcgtcaccggtaacgcctcatccttaggttacatcctcggattatctcacgactacatgttatagcgatcagatcgtggatttctcaacatgag |
1068925 |
T |
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| Q |
229 |
tgagcttgacatcgatcatgt |
249 |
Q |
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| T |
1068926 |
cgaacttgacagcgatcatgt |
1068946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 14838770 - 14838822
Alignment:
| Q |
137 |
gtcaccggtcatgcatccgccgcaggttacatcctcgcattatctcacgacta |
189 |
Q |
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||||||||| | || || |||| |||||||||||||| ||||||||||||||| |
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| T |
14838770 |
gtcaccggtaacgcctcagccgtaggttacatcctcggattatctcacgacta |
14838822 |
T |
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