View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_low_2 (Length: 514)
Name: NF17316_low_2
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 9 - 499
Target Start/End: Original strand, 27610220 - 27610710
Alignment:
| Q |
9 |
gagatgaagggaggagtttgacaacattgtttcattcgaagcaaatttgctacatttataaaattcttataagatttatctaaggacacttttatgttct |
108 |
Q |
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| T |
27610220 |
gagatgaagggaggagtttgacaacattgtttcattcgaagcaaatttgctacatttataaaattcttataagatttatctaaggacacttttatgttct |
27610319 |
T |
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| Q |
109 |
ttggcgttcattggggtacctcccagcttttagcaagttattatacttgcttagatgctttgaaggatcaactttcagaccatcgtggaccctgatttga |
208 |
Q |
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| T |
27610320 |
ttggcgttcattggggtacctcccagcttttagcaagttattatacttgcttagatgctttgaaggatcaactttcagaccatcgtggaccctgatttga |
27610419 |
T |
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| Q |
209 |
tcatttctctgatcaacatgcaccctgacgtgggaactctggggcaaaacattgttattattgtgatccatatagttcctttccatgtctctcacatatc |
308 |
Q |
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| T |
27610420 |
tcatttctctgatcaacatgcaccctgacgtgggaactctggggcaaaacattgttattattgtgatccatatagttcctttccatgtctctcacatatc |
27610519 |
T |
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| Q |
309 |
tgctggatttcctcaattttttacttgtatgttgtggaggatagccttccttgggactggaaattttagctgctccttcaacgtactctgaaacaacaaa |
408 |
Q |
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| T |
27610520 |
tgctggatttcctcaattttttacttgtatgttgtggaggatagccttccttgggactggaaattttagctgctccttcaacgtactctgaaacaacaaa |
27610619 |
T |
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| Q |
409 |
catgatttacattatgaaaattttatctaaattttgattgttcatcatgatgacattatgaaaagattggctacatcatcaatgaaattat |
499 |
Q |
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| T |
27610620 |
catgatttacattatgaaaattttatctaaattttgattgttcatcatgatgacattatgaaaagattggctacatcatcaatgaaattat |
27610710 |
T |
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