View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17316_low_23 (Length: 223)
Name: NF17316_low_23
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 42732442 - 42732631
Alignment:
| Q |
18 |
tatacattaagggctgagacccaatagaacagtccattaggccccaattactcctgagaaagagcctcttcgttgtcacttgtataacctattactataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42732442 |
tatacattaagggctgagacccaatagaacagtccattaggccccaattactcctgagaaagagcctcttcgttgtcacttgtataatctattactataa |
42732541 |
T |
|
| Q |
118 |
gctctgactcattgtccttctctatagggaatgcttatattgttgcattgcatgcgttattatggtctgattactacatgacatcaataa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732542 |
gctctgactcattgtccttctctatagggaatgcttatattattgcattgcatgcgttattatggtctgattactacatgacatcaataa |
42732631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University