View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_low_3 (Length: 483)
Name: NF17316_low_3
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 18564280 - 18564728
Alignment:
| Q |
17 |
atcaatacctgaatgacaatatatagtttgctatgttcatctgaaattcaatttacttataaaataatatagttgcatcagaatcttccataagcttata |
116 |
Q |
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| T |
18564280 |
atcaatacctgaatgaaaatatatagtttgctatgttcatctgaaattcaatttacttataaaataatatagttgcatcagaatcttccataagcttata |
18564379 |
T |
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| Q |
117 |
ttaatttcagtttttctattagtgtactatatgtatttaatttctcagtaactggttcatgattgagaaggtgccttaaaacaaataaatgttccacctt |
216 |
Q |
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| T |
18564380 |
ttaatttcagtttttctattggtgtactatatgtatttaatttcttagtaactggatcatgattgagaaggtgccttaacacaaataaatgttccacctt |
18564479 |
T |
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| Q |
217 |
gaagaacatattttgtatattgcttcaatagtacttgtgttttttatcttatagattgagcaggctccaattcaaagatgttcaggtgaacttgtctttc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
18564480 |
gaagaacatattttgtatattgcttcaatagtacttgtgttctttaacttttagattgagctggctccaattcaaagatgttcaggtgaacttgtcttgc |
18564579 |
T |
|
| Q |
317 |
aacttggatataatgtagcattccatacttctatcgctgtcgagattaagcatctatgtgtttgcaggtaaacccttccggtcggagacttgtactgtca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18564580 |
aacttggatataatgtagcattccatacttctatcgctgtcgagattaagcatctatgagtttgcaggtaaacccttccggtcggagacttgtactgtca |
18564679 |
T |
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| Q |
417 |
tccaacagttgctaccatagaagcagggaaagacataattttgttctttct |
467 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18564680 |
tccaacagttgctaccatagaagcagggaaagac--aattttgttctttct |
18564728 |
T |
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