View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_low_4 (Length: 427)
Name: NF17316_low_4
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 29032425 - 29032829
Alignment:
| Q |
8 |
aatctttccataccatggaacaagcactaagaactctcaacggaatgcctccaatggaagaaccagaaaaccaccaccaccacnnnnnnncttcctcttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |
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| T |
29032425 |
aatctttccataccatggaacaagcactaagaactctcaacggaatgcctccaatggaagaacaagacaaccaccaccaccacaaaaaaacttcctcttc |
29032524 |
T |
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| Q |
108 |
ctcttccacttctgcaaccaacaaaacaggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatgcagccgagataagagaccca |
207 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032525 |
ctcttccacttctgcaaccaacaaaactggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatgcagccgagataagagaccca |
29032624 |
T |
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| Q |
208 |
cattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatccatgcgcggttccaaagctc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032625 |
cattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatccatgcgcggttccaaagctc |
29032724 |
T |
|
| Q |
308 |
gaaccaatttcttctatcccgaaaccaccgaacaaaaccttcttcatccatgccataatcataagcagcaaaaatctcaacaccgccatgtcactaagtt |
407 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032725 |
gaaccaatttcttctatcccgaaacaaccgaacaaaaccttcttcatccattccataatcataagcagcaaaaatctcaacaccgccatgtcactaagtt |
29032824 |
T |
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| Q |
408 |
caaca |
412 |
Q |
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| T |
29032825 |
caaca |
29032829 |
T |
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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 14158570 - 14158661
Alignment:
| Q |
151 |
taccgtggagtccgacgccgaccatggggccgttatgcagccgagataagagacccacattccaaagaacgccgctggctcggaactttcga |
242 |
Q |
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||||| ||||| || ||| ||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| ||||| ||||| |
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| T |
14158570 |
taccgcggagttcgccgcagaccatggggccgctatgcagctgagataagagaccctcagtccaaagaacgccgctggcttggaaccttcga |
14158661 |
T |
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