View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_low_7 (Length: 389)
Name: NF17316_low_7
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 4680935 - 4681312
Alignment:
| Q |
1 |
cataatattcgactattttgtcatatatactgaaacaaccaccatataaaaaataacctagctaaagtaagtttatagttgtctgtataattattaatta |
100 |
Q |
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| T |
4680935 |
cataatattcgactattttgtcatatatactgaaacaaccaccatataaaaaagaacctagctaaagtaagtttatagttgtctgtataattattaatta |
4681034 |
T |
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| Q |
101 |
ttaaattataatattagagcatgctaagttttgaattgagaacccccaaaa--tcaactgaaaataagaagttgagag--taattataccaggttgaagt |
196 |
Q |
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| T |
4681035 |
ttaaattgtaatattagagcatgctaagttttgaattgagaacccccaaaaaatccactgaaaataagaagttgagagagtatttataccaggttgaagt |
4681134 |
T |
|
| Q |
197 |
attgagcgagtttagccatagtggtgctttcaccaccagggatgataagggaattaatggtgagaagttgttctggctttcgtatctcaacacctttcac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4681135 |
attgagcgagtttagccatagtggtgctttcaccaccagggatgataagggaattaatggtgagaagttgttctggttttcgtatctcaacacctttcac |
4681234 |
T |
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| Q |
297 |
acccaatcttcttaaaactgcaatagacgctgaatgagaaaattgaaataagagaaaagaaagagag-aagttgaata |
373 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
4681235 |
acccaatcttcttaaaactgcaatagacactgaatgagaaaattgaaataagagaaaagaaacagagaaagttgaata |
4681312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 167 - 321
Target Start/End: Complemental strand, 2581534 - 2581380
Alignment:
| Q |
167 |
aagttgagagtaattataccaggttgaagtattgagcgagtttagccatagtggtgctttcaccaccagggatgataagggaattaatggtgagaagttg |
266 |
Q |
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|||||| | ||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2581534 |
aagttgtgtgtatttataccaggttgaaatattcagcgcttttagccatagtggtgctttcaccaccagggatgataagggaattaatggtgagaagttg |
2581435 |
T |
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| Q |
267 |
ttctggctttcgtatctcaacacctttcacacccaatcttcttaaaactgcaata |
321 |
Q |
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|| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
2581434 |
ttatggttttcgtatctcaacacctttcacacccagtcttcttaaaactacaata |
2581380 |
T |
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