View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17316_low_9 (Length: 356)
Name: NF17316_low_9
Description: NF17316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17316_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 39365185 - 39364850
Alignment:
| Q |
9 |
atagtagtgatcctagccattatcactatccttctcaatcttcaatctttggccatcaaactggtgctacttttagtgatgacaatcctcatgcttgttc |
108 |
Q |
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| T |
39365185 |
atagtagtgatcctagccattatcactatccttctcaatcttcaatctttggccatcaaactggtgctacttttagtgatgacaatcctcatgcttgttc |
39365086 |
T |
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| Q |
109 |
tatcatgtgatcatttcatggtcaaaccaatnnnnnnnnn-ctttgtgcacttttt-attatgaagtatgaatatgaattgctttaatttaaaacttaaa |
206 |
Q |
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| T |
39365085 |
tatcatgtgatcatttcatggtcaaaccaataaaaaaaaaactttgtgcacttttttattatgaagtatgaatatgaattgctttaatttaaaacttaaa |
39364986 |
T |
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| Q |
207 |
ttgcatgtaacgatgcaagctttttcattccattttagttatttattttagtgactactatatatataaaccttttttcttgagttctattcttcttgcc |
306 |
Q |
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| T |
39364985 |
ttgtatgtaacgatgcaagctttttcattccattttagttatttattttagtgactactatatatataaaccttttttcttgagttctattcttcttccc |
39364886 |
T |
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| Q |
307 |
caatttaaccttgaagtgtatattggagttgatgat |
342 |
Q |
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| T |
39364885 |
caatttaaccttgaagtgtatattggagttgatgat |
39364850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 96 - 342
Target Start/End: Original strand, 32313145 - 32313384
Alignment:
| Q |
96 |
ctcatgcttgttctatcatgtgatcatttcatggtcaaaccaatnnnnnnnnnctttgtgcactttttattatgaagtatgaatatgaattgctttaa-- |
193 |
Q |
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| T |
32313145 |
ctcatgcttggtctattatgtgatcatttcatggtcaaaccaataaaaa----ctttatgcactttttaatataaagtataaat-tgctttaacttaaaa |
32313239 |
T |
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| Q |
194 |
tttaaaacttaaattgcatgtaacgatgcaagctttttcattccattttagttatttattttagtgactactatatatataaacctttttt-cttgagtt |
292 |
Q |
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||||||| |||||||| ||||||| |||||||| |||| ||| |||||| ||||||||||||||||||||| |||||||||||||| | || ||| |
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| T |
32313240 |
tttaaaatttaaattgtatgtaacaatgcaagccttttaatttcattttggttatttattttagtgactac------tataaaccttttttccctgtgtt |
32313333 |
T |
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| Q |
293 |
ctattcttcttgcccaatttaaccttgaagtgtatatt-ggagttgatgat |
342 |
Q |
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| T |
32313334 |
ctattcttcttgcccaatttaacgttgaagggtatattaggagttgatgat |
32313384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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