View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17317_high_5 (Length: 327)
Name: NF17317_high_5
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 30951128 - 30951422
Alignment:
| Q |
15 |
cacagatcagggttagcatctatcttggcaaaaaagtcatcaccgactggattcaaggagcttatcaatctgttcacgacaacgtctgtatccacgttga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30951128 |
cacagatcagggttagcatctatcttggcaaaaaagtcatcaccgactggattcaaggagcttatcaatctgttcacgacaacgtctgtatccacgttga |
30951227 |
T |
|
| Q |
115 |
aatactgtgtgtacgatgagacgctaaagaatccctgccagttattagctggctgttgcccaaaagcatctgcatggatgaataagccacgtatccgtga |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30951228 |
aatactgtgtgtacgatgagacactaaagaatccctgccagttattagctggctgttgcccaaaagcatctgcatggatgaataagccacgtatccgtga |
30951327 |
T |
|
| Q |
215 |
ttgatcaatacagcatagattggtaataaaaatgtaagattacaactattctctaatcagtctacataatcaaccgtcagtattaatcatctatc |
309 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30951328 |
ttgatcaatatagcatagattggtaataaaaatgtaagattacaactattctctaatcagtctacataatcaaccgtcagtattaatcatctatc |
30951422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 30966940 - 30967234
Alignment:
| Q |
15 |
cacagatcagggttagcatctatcttggcaaaaaagtcatcaccgactggattcaaggagcttatcaatctgttcacgacaacgtctgtatccacgttga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30966940 |
cacagatcagggttagcatctatcttggcaaaaaagtcatcaccgactggattcaaggagcttatcaatctgttcacgacaacgtctgtatccacgttga |
30967039 |
T |
|
| Q |
115 |
aatactgtgtgtacgatgagacgctaaagaatccctgccagttattagctggctgttgcccaaaagcatctgcatggatgaataagccacgtatccgtga |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30967040 |
aatactgtgtgtacgatgagacactaaagaatccctgccagttattagctggctgttgcccaaaagcatctgcatggatgaataagccacgtatccgtga |
30967139 |
T |
|
| Q |
215 |
ttgatcaatacagcatagattggtaataaaaatgtaagattacaactattctctaatcagtctacataatcaaccgtcagtattaatcatctatc |
309 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30967140 |
ttgatcaatatagcatagattggtaataaaaatgtaagattacaactattctctaatcagtctacataatcaaccgtcagtattaatcatctatc |
30967234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 34688829 - 34689011
Alignment:
| Q |
14 |
gcacagatcagggttagcatctatcttggcaaaaaagtcatcaccgactggattcaaggagcttatcaatctgttcacgacaacgtctgtatccacgttg |
113 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||| |||| |||||||| ||||| |||||||||||| ||| ||| | |||||||| || | |
|
|
| T |
34688829 |
gcacaaatcagggttagcatctatcttgctgaagaagtctccaccaactggattgaaggaacttatcaatctggtcataacagcatctgtatctacatca |
34688928 |
T |
|
| Q |
114 |
aaatactgtgtgtacgatgagacgctaaagaatccctgccagttattagctggctgttgcccaaaagcatctgcatggatgaa |
196 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| ||| |||||| || | ||||||||| |||| || |||||||| ||||| |
|
|
| T |
34688929 |
aaatactgcgagtaagatgagacgctaaagaaccccctccagttgtttgttggctgttgttcaaatgcttctgcatgcatgaa |
34689011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University