View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17317_high_7 (Length: 314)

Name: NF17317_high_7
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17317_high_7
NF17317_high_7
[»] chr1 (3 HSPs)
chr1 (207-300)||(30783475-30783568)
chr1 (7-42)||(30783410-30783445)
chr1 (222-296)||(30740182-30740256)
[»] chr3 (1 HSPs)
chr3 (124-174)||(19649643-19649693)
[»] chr5 (1 HSPs)
chr5 (128-173)||(5002208-5002253)
[»] chr8 (1 HSPs)
chr8 (124-168)||(8793759-8793803)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 30783475 - 30783568
Alignment:
Q  207 taggtcaatcattaagtgtacctccaatagatgtcctatgttgacgacaaatgcaccaggaagaggctcaaccgtgatccactttccatccttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30783475 taggtcaatcattaagtgtacctccaatagatgtcctatgttgacgacaaatgcaccaggaagaggctcaaccgtgatccactttccatccttt 30783568  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 30783410 - 30783445
Alignment:
Q  7 atgataaagtacataaataacaaagatacataatag 42  Q
    ||||||||||||||||||||||||||||||||||||    
T  30783410 atgataaagtacataaataacaaagatacataatag 30783445  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 30740182 - 30740256
Alignment:
Q  222 gtgtacctccaatagatgtcctatgttgacgacaaatgcaccaggaagaggctcaaccgtgatccactttccatc 296  Q
    |||||||||||| | ||| ||||| |||| ||||||||||  || ||||||||||||  ||||||| ||||||||    
T  30740182 gtgtacctccaacacatggcctatattgatgacaaatgcatgagtaagaggctcaacattgatccaatttccatc 30740256  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 19649643 - 19649693
Alignment:
Q  124 ttagtctatgttttagaccatatacatcaattactcaataaatcttaaaaa 174  Q
    ||||||||| |||||||||  |||||||||||||||||| ||||| |||||    
T  19649643 ttagtctatattttagaccgaatacatcaattactcaatgaatctaaaaaa 19649693  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 5002208 - 5002253
Alignment:
Q  128 tctatgttttagaccatatacatcaattactcaataaatcttaaaa 173  Q
    ||||| |||||||| | |||||||||||||||||||||||| ||||    
T  5002208 tctatattttagacaagatacatcaattactcaataaatctaaaaa 5002253  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 8793803 - 8793759
Alignment:
Q  124 ttagtctatgttttagaccatatacatcaattactcaataaatct 168  Q
    ||||||||| || ||||||| |||||||||||||||||| |||||    
T  8793803 ttagtctatattatagaccaaatacatcaattactcaatgaatct 8793759  T

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