View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17317_low_1 (Length: 619)
Name: NF17317_low_1
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 14 - 618
Target Start/End: Complemental strand, 8725731 - 8725111
Alignment:
| Q |
14 |
gttttctctgtccctttaaatcaaagattcacatttcaccatcaaactgtcagttatgagtcatgcataagttcacaaacaaaactaattcaacctaggc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8725731 |
gttttctctgtccctttaaatcaaagattcacatttcaccatcaaactgtcagttatgagtcatgcataagttcacaaacaaaactaattcaacctaggc |
8725632 |
T |
|
| Q |
114 |
atttcattcaagtactttattcctaatccataaaataaaatcaccctgcattgcaaaaatgtggcaacactcatgttaccataatggatggttcagaaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8725631 |
atttcattcaagtactttattcctaatccataaaagaaaatcaccctgcattgcaaaaatgtggcaacactcatgttaccataatggatggttcacaaac |
8725532 |
T |
|
| Q |
214 |
aaatggaaacagacttgttggaattgattggaatgaaacatcttagaataagtctcacatcaccgagtatgttaaaggaagagggaggtcgatgttgtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8725531 |
aaatggaaacagacttgttggaattgattggaatgaaacatcttagaacaagtctcacattaccgagtatgttaaaggaagagggaggtcgatgttgtat |
8725432 |
T |
|
| Q |
314 |
ataatcaaattcttatttacaatatgcacaagtcgtaaaca----------------cttatctttatctcatactcttgtcttaacatgttgagagctg |
397 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8725431 |
ataatcaaattcttatttacaatatgcacaagtcggaaacacttaagtttatatactcttatctttatctcatactcttgtcttaacatgttgagagctg |
8725332 |
T |
|
| Q |
398 |
tagtataaatatttacttcagagagtgagagaggcttcggagttttccacgttatattcttgtgttatgattgtcttctgctttcagtagtaacaaaatc |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8725331 |
tagtataaatatttacttcagagagtgagagaggcttcggagttttccacgttatattcttgtgttatgattgtcttctgctttcagtagtaacaaaatc |
8725232 |
T |
|
| Q |
498 |
cccgttaacgaacatcgaattgacgaacttattttcctcgtcaacagttgcaaacgtgctctggataacattgttttcattttttaaataggcattgtaa |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
8725231 |
cccgttaacgaacatcgaattgacgaacttattttcctcgtcaacagttgcaaacgtgctctgtataacattgttttcatttttgaaataggcattgtaa |
8725132 |
T |
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| Q |
598 |
aattgtgcgtttgagaataat |
618 |
Q |
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| T |
8725131 |
aattgtgcgtttgagaataat |
8725111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 469
Target Start/End: Complemental strand, 7284484 - 7284456
Alignment:
| Q |
441 |
tttccacgttatattcttgtgttatgatt |
469 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7284484 |
tttccacgttatattcttgtgttatgatt |
7284456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 42234132 - 42234168
Alignment:
| Q |
240 |
attggaatgaaacatcttagaataagtctcacatcac |
276 |
Q |
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|||||||||||||||||||||| |||| ||||||||| |
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| T |
42234132 |
attggaatgaaacatcttagaacaagtatcacatcac |
42234168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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