View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17317_low_10 (Length: 287)
Name: NF17317_low_10
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 3076747 - 3076490
Alignment:
| Q |
21 |
ccacttaagtactttcatagccaaatcaaagaaagaaatagtagcttctcaatgaaagtacannnnnnnnnnnncctacttcaggaaattggagttggtg |
120 |
Q |
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| T |
3076747 |
ccacttaagtactttcatagccaaatcaaagaaagaaatagtagcttctcaatgaaagtacattttttatttttcctacttcaggaaattggagctggtg |
3076648 |
T |
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| Q |
121 |
gtttattgacatgttgatactctcatgtccccaaacattaaagtcatgtaggcacgtgctcatttcaactagtgttaatcaccaccaatggcttgtttgc |
220 |
Q |
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|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076647 |
gtttgttggcatgttgatactctcatggccccaaacattaaagtcatgtaggcacgtgctcatttcaactagtgttaatcaccaccaatggcttgtttgc |
3076548 |
T |
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| Q |
221 |
aaagtccttttgcatttaatattttgtagcatgcatgcactattatatcatattcttc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076547 |
aaagtccttttgcatttaatattttgtagcatgcatgcactattatatcatattcttc |
3076490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 3318982 - 3319132
Alignment:
| Q |
95 |
cctacttcaggaaattggagttggtggtttattgacatgttgatactctcatgtccccaaacattaaagtcatgtaggcacgtgctcatttcaactagtg |
194 |
Q |
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||||||| |||||| ||||||| ||||||| || |||| ||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||| |
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| T |
3318982 |
cctactttaggaaactggagttagtggtttgctggcatgctgatactctcatggtcccaaacttaaaactcatgtaggcacgtgctcatttcaactagtg |
3319081 |
T |
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| Q |
195 |
ttaatcaccaccaatggcttgtttgcaaagtccttttgcatttaatattttgtag |
249 |
Q |
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| T |
3319082 |
tcaatcaccactaa----tagtttgcaatgcccttttgcatttaatattttgtag |
3319132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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