View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17317_low_12 (Length: 273)
Name: NF17317_low_12
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_12 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: scaffold0425 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 13269 - 13023
Alignment:
| Q |
11 |
cacagattcatccacctaagatacagttctatcaactctagaagtcccaatatatccttttgatctgcaaggaactctaacctcctcagcaatactttac |
110 |
Q |
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| T |
13269 |
cacagattcatccacctaagatacagttctatcaactcttgaagtcccaatatatccttttgatctgcaaggaactctaacctcctcagcaatactttac |
13170 |
T |
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| Q |
111 |
tcctagattccaatcgtcaattaatgaaacatgatagaaagcttcttgctgtgaacttctgttgtatctaagtagccatcacatccaatagttgctctac |
210 |
Q |
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| T |
13169 |
tcctagattccaatcgtctattaatgaaacatgatagaaagcttcttgctgtgaccttcttttgtatctaagtagccatcacatccaatagttgctctac |
13070 |
T |
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| Q |
211 |
ttcgtatacctcatgtatggaaggatcaagccaattactcatgtttg |
257 |
Q |
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| T |
13069 |
ttcgtatacctcatgtatggagtgatcaagccaattcctcatgtttg |
13023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 6850161 - 6849915
Alignment:
| Q |
11 |
cacagattcatccacctaagatacagttctatcaactctagaagtcccaatatatccttttgatctgcaaggaactctaacctcctcagcaatactttac |
110 |
Q |
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| T |
6850161 |
cacagattcatccacctaagatacaattctatcaactcttgaagtcccaatatatccctttcagctgcaaggaactctaacctcctcagcaatactttac |
6850062 |
T |
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| Q |
111 |
tcctagattccaatcgtcaattaatgaaacatgatagaaagcttcttgctgtgaacttctgttgtatctaagtagccatcacatccaatagttgctctac |
210 |
Q |
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| T |
6850061 |
tcctagattccaatcgtctattaatgaaacatgatagaaagcttcttgctgtgaccttctattgtatctaagtagccatcacatccaatagttgctcaac |
6849962 |
T |
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| Q |
211 |
ttcgtatacctcatgtatggaaggatcaagccaattactcatgtttg |
257 |
Q |
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| T |
6849961 |
ttcgtatacctcatgtatggagtgatcaagccaagtcctcatgtttg |
6849915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 6245993 - 6246068
Alignment:
| Q |
51 |
gaagtcccaatatatccttttgatctgcaaggaactctaacctcctcagcaatactttactcctagattccaatcg |
126 |
Q |
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| T |
6245993 |
gaagtcccaatatattcttttgatctgcaagaaactctagcctcttgagcaatactttaatcctagattcaaatcg |
6246068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 6721174 - 6721119
Alignment:
| Q |
171 |
gttgtatctaagtagccatcacatccaatagttgctctacttcgtatacctcatgt |
226 |
Q |
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| T |
6721174 |
gttgtatgtcagtagcaatcacatccaatagttgctctacttcgtatacctcatgt |
6721119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 6238369 - 6238437
Alignment:
| Q |
58 |
caatatatccttttgatctgcaaggaactctaacctcctcagcaatactttactcctagattccaatcg |
126 |
Q |
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| T |
6238369 |
caatctatccttttgatttgcaagaaactctaacctcttgagcaatactttaatcctagattcaaatcg |
6238437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 13269799 - 13269763
Alignment:
| Q |
188 |
atcacatccaatagttgctctacttcgtatacctcat |
224 |
Q |
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| T |
13269799 |
atcacatccaatagttgctctaattcgtatacctcat |
13269763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 6590693 - 6590656
Alignment:
| Q |
52 |
aagtcccaatatatccttttgatctgcaaggaactcta |
89 |
Q |
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| T |
6590693 |
aagtcccaatttatccttttgatctgcaagaaactcta |
6590656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 7750916 - 7750961
Alignment:
| Q |
181 |
agtagccatcacatccaatagttgctctacttcgtatacctcatgt |
226 |
Q |
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| T |
7750916 |
agtagcaatcacatcgaatagttgctctaattcgtatacatcatgt |
7750961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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