View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17317_low_13 (Length: 260)
Name: NF17317_low_13
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 21493472 - 21493706
Alignment:
| Q |
18 |
gtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcataggaattgttgta |
117 |
Q |
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| T |
21493472 |
gtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcatcggaattgttgta |
21493571 |
T |
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| Q |
118 |
cctgaccgtgtcaaccctccagattactacattgacattttagaaggaataataaaaccaagtgcaggctcgggagtgacccataaacaactaccagtta |
217 |
Q |
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| T |
21493572 |
cctgaccgtgtcaaccctccagattactacattgacattttagaaggaataataaaaccaagtgcaggctcaggagtgacccataaacaactaccagtta |
21493671 |
T |
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| Q |
218 |
gatggatgcttcataatggatattctgtgcctatg |
252 |
Q |
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| T |
21493672 |
gatggatgcttcataatggatattctgtgcctatg |
21493706 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 41041973 - 41041900
Alignment:
| Q |
37 |
ctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcataggaat |
110 |
Q |
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| T |
41041973 |
ctagcaaaaggtggtcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaat |
41041900 |
T |
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