View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17317_low_15 (Length: 257)

Name: NF17317_low_15
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17317_low_15
NF17317_low_15
[»] chr3 (19 HSPs)
chr3 (10-240)||(50507609-50507838)
chr3 (157-236)||(18167934-18168013)
chr3 (133-236)||(23483208-23483312)
chr3 (133-227)||(31608280-31608374)
chr3 (161-227)||(24989750-24989816)
chr3 (66-108)||(5218975-5219017)
chr3 (66-108)||(10049200-10049242)
chr3 (66-108)||(10471439-10471481)
chr3 (66-108)||(13286932-13286974)
chr3 (66-108)||(24348805-24348847)
chr3 (66-108)||(26229374-26229416)
chr3 (66-108)||(28555252-28555294)
chr3 (66-108)||(35846749-35846791)
chr3 (66-108)||(37126716-37126758)
chr3 (66-108)||(47697770-47697812)
chr3 (66-108)||(48458388-48458430)
chr3 (66-108)||(51167262-51167304)
chr3 (66-108)||(51754425-51754467)
chr3 (67-103)||(9116495-9116531)
[»] chr2 (9 HSPs)
chr2 (50-236)||(35006340-35006524)
chr2 (139-194)||(16312899-16312954)
chr2 (66-108)||(11124415-11124457)
chr2 (66-108)||(17977829-17977871)
chr2 (66-108)||(19390653-19390695)
chr2 (66-108)||(20115064-20115106)
chr2 (66-108)||(21867065-21867107)
chr2 (66-108)||(30787225-30787267)
chr2 (67-108)||(39430341-39430382)
[»] chr4 (16 HSPs)
chr4 (65-236)||(15506463-15506634)
chr4 (133-194)||(37829698-37829759)
chr4 (157-203)||(42130988-42131034)
chr4 (176-235)||(7818345-7818405)
chr4 (133-212)||(1536872-1536950)
chr4 (66-108)||(3875708-3875750)
chr4 (176-210)||(7795234-7795268)
chr4 (66-108)||(17445703-17445745)
chr4 (139-185)||(20292593-20292639)
chr4 (66-108)||(27767678-27767720)
chr4 (66-108)||(35949545-35949587)
chr4 (66-108)||(54202333-54202375)
chr4 (66-108)||(56162476-56162518)
chr4 (67-108)||(36309046-36309087)
chr4 (67-108)||(50621666-50621707)
chr4 (66-114)||(39677742-39677790)
[»] chr7 (16 HSPs)
chr7 (142-227)||(40524823-40524908)
chr7 (133-227)||(41469499-41469593)
chr7 (159-236)||(34012732-34012810)
chr7 (139-236)||(37544872-37544970)
chr7 (159-227)||(21202959-21203027)
chr7 (66-108)||(3112162-3112204)
chr7 (66-108)||(9741313-9741355)
chr7 (66-123)||(12848443-12848501)
chr7 (66-108)||(18676843-18676885)
chr7 (66-108)||(31588005-31588047)
chr7 (66-108)||(42697409-42697451)
chr7 (66-108)||(44508506-44508548)
chr7 (66-108)||(47455053-47455095)
chr7 (186-227)||(22114119-22114160)
chr7 (186-227)||(40525281-40525322)
chr7 (66-114)||(12726299-12726347)
[»] chr1 (18 HSPs)
chr1 (156-236)||(9263495-9263576)
chr1 (66-236)||(45926129-45926300)
chr1 (161-227)||(51547072-51547138)
chr1 (133-194)||(1702569-1702630)
chr1 (66-108)||(11335670-11335712)
chr1 (66-108)||(11493690-11493732)
chr1 (66-108)||(13556078-13556120)
chr1 (66-108)||(17926272-17926314)
chr1 (66-108)||(25730002-25730044)
chr1 (66-108)||(25828678-25828720)
chr1 (66-108)||(26770207-26770249)
chr1 (66-108)||(37094234-37094276)
chr1 (66-108)||(40359668-40359710)
chr1 (66-108)||(48542634-48542676)
chr1 (66-108)||(50490804-50490846)
chr1 (66-108)||(52469515-52469557)
chr1 (186-227)||(51546644-51546685)
chr1 (66-106)||(3994953-3994993)
[»] chr6 (19 HSPs)
chr6 (157-236)||(17314940-17315020)
chr6 (158-212)||(26181103-26181157)
chr6 (172-236)||(14253136-14253201)
chr6 (155-236)||(6675217-6675297)
chr6 (159-236)||(26947181-26947258)
chr6 (139-194)||(32173000-32173055)
chr6 (66-108)||(4169667-4169709)
chr6 (66-108)||(4210396-4210438)
chr6 (66-108)||(5545374-5545416)
chr6 (66-108)||(8658990-8659032)
chr6 (66-108)||(11590249-11590291)
chr6 (66-108)||(17595951-17595993)
chr6 (66-108)||(25144162-25144204)
chr6 (66-108)||(32938488-32938530)
chr6 (66-108)||(33489795-33489837)
chr6 (155-197)||(33659676-33659718)
chr6 (139-184)||(29880728-29880773)
chr6 (64-108)||(742938-742982)
chr6 (68-108)||(13889151-13889191)
[»] chr5 (6 HSPs)
chr5 (133-225)||(6733389-6733480)
chr5 (66-108)||(3390914-3390956)
chr5 (66-108)||(8935969-8936011)
chr5 (66-108)||(15472749-15472791)
chr5 (66-108)||(33570152-33570194)
chr5 (66-108)||(35066126-35066168)
[»] scaffold0570 (1 HSPs)
scaffold0570 (133-236)||(3802-3906)
[»] chr8 (22 HSPs)
chr8 (152-227)||(1848357-1848432)
chr8 (133-212)||(35979366-35979445)
chr8 (160-212)||(32911088-32911140)
chr8 (142-194)||(39713354-39713406)
chr8 (139-194)||(4006536-4006591)
chr8 (65-108)||(16584424-16584467)
chr8 (66-108)||(5458262-5458304)
chr8 (66-108)||(8352382-8352424)
chr8 (66-108)||(20818957-20818999)
chr8 (66-108)||(25487304-25487346)
chr8 (66-108)||(27719244-27719286)
chr8 (66-108)||(29997496-29997538)
chr8 (66-108)||(31097517-31097559)
chr8 (66-108)||(33411047-33411089)
chr8 (66-108)||(35393601-35393643)
chr8 (66-108)||(36781654-36781696)
chr8 (66-108)||(38098864-38098906)
chr8 (139-185)||(44704007-44704053)
chr8 (66-108)||(45084247-45084289)
chr8 (67-108)||(30655004-30655045)
chr8 (133-194)||(38167778-38167839)
chr8 (54-98)||(32911201-32911245)
[»] scaffold0562 (1 HSPs)
scaffold0562 (66-108)||(6527-6569)
[»] scaffold0189 (1 HSPs)
scaffold0189 (66-108)||(27894-27936)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 50507609 - 50507838
Alignment:
Q  10 cgaagaatattttaccaatgtcataagaatttttcttttaacctcatgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaata 109  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50507609 cgaataatattttaccaatgtcataagaatttttcttttaaccccatgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaata 50507708  T
Q  110 accctttcatataannnnnnnnnaaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaa 209  Q
    ||||||||||||||         ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50507709 accctttcatataa-ttttttttaaaactttgatttcattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaa 50507807  T
Q  210 tctttgtagaagattaaaagtgaatcataac 240  Q
    |||||||||||||||||||||||||||||||    
T  50507808 tctttgtagaagattaaaagtgaatcataac 50507838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 18167934 - 18168013
Alignment:
Q  157 actctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaaagtgaatca 236  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| | | || ||||||||||||||||||    
T  18167934 actctaaaatttcaccctctttcacccacaaagaatcatggatgttcaatcaatttatataaaagattaaaagtgaatca 18168013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 23483312 - 23483208
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtg 231  Q
    ||||| ||||||| ||| ||| |||||||||||||||| || ||||| |||||||||||| ||| ||| ||||||||||| | |||||||||||| ||||    
T  23483312 aaaaccttgatttcattcattgtcactctaaaatttcacccgctttcccccacaaacaattatggatggtcaatcaatctatatagaagattaaagagtg 23483213  T
Q  232 aatca 236  Q
    |||||    
T  23483212 aatca 23483208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 31608374 - 31608280
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    ||||| ||||||| ||| |||||| |||||||||||||   |||||||||||  |||||||||| ||||||||||||||| | ||||||||||||    
T  31608374 aaaaccttgatttcattcattatcgctctaaaatttcactatctttcacccaggaacaatcatggatgttcaatcaatctctatagaagattaaa 31608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 24989750 - 24989816
Alignment:
Q  161 taaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    ||||||||||||| ||||||| ||| |||||||||  ||||||||||||||| | ||||||||||||    
T  24989750 taaaatttcatccactttcactcacgaacaatcatagatgttcaatcaatctctatagaagattaaa 24989816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 5218975 - 5219017
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  5218975 gttacacccaaatttatttaaaattttacaataataccaaaat 5219017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 10049242 - 10049200
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  10049242 gttacacccaaatttatttaaaattttacaataataccaaaat 10049200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 10471481 - 10471439
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  10471481 gttacacccaaatttatttaaaattttacaataataccaaaat 10471439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 13286932 - 13286974
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  13286932 gttacacccaaatttatttaaaattttacaataataccaaaat 13286974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 24348805 - 24348847
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  24348805 gttacacccaaatttatttaaaattttacaataataccaaaat 24348847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 26229374 - 26229416
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  26229374 gttacacccaaatttatttaaaattttacaataataccaaaat 26229416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 28555294 - 28555252
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  28555294 gttacacccaaatttatttaaaattttacaataataccaaaat 28555252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 35846749 - 35846791
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  35846749 gttacacccaaatttatttaaaattttacaataataccaaaat 35846791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 37126758 - 37126716
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  37126758 gttacacccaaatttatttaaaattttacaataataccaaaat 37126716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 47697770 - 47697812
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  47697770 gttacacccaaatttatttaaaattttacaataataccaaaat 47697812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 48458388 - 48458430
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  48458388 gttacacccaaatttatttaaaattttacaataataccaaaat 48458430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 51167304 - 51167262
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  51167304 gttacacccaaatttatttaaaattttacaataataccaaaat 51167262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 51754425 - 51754467
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  51754425 gttacacccaaatttatttaaaattttacaataataccaaaat 51754467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 9116531 - 9116495
Alignment:
Q  67 ttacacccaaatttacttaatattttacaatagtacc 103  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  9116531 ttacacccaaatttacttaaaattttacaataatacc 9116495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 35006524 - 35006340
Alignment:
Q  50 acctcatgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnnaaaactttgatttaatt 149  Q
    |||||||||||||| ||||||||| |||||||||||| | ||||||||| || ||||||  |||||| ||| ||         ||||| || |||| |||    
T  35006524 acctcatgtattttcggttacacctaaatttacttaaaagtttacaataatatcaaaattgcccttttataaaaaatgtc---aaaaccttaatttcatt 35006428  T
Q  150 aattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatt-aaaagtgaatca 236  Q
     ||| |||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||| | ||||||||| || |||||||||    
T  35006427 cattgtcactctaaaatttcaccatctttcatccacaaacaatcatggatgttcaatcaatctctatagaagattgaagagtgaatca 35006340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 16312899 - 16312954
Alignment:
Q  139 ttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 194  Q
    ||||||| ||| ||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  16312899 ttgatttcattcattgtcactctaaaatttcattctctttcacccaccaacgatca 16312954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 11124457 - 11124415
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  11124457 gttacacccaaatttatttaaaattttacaataataccaaaat 11124415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 17977871 - 17977829
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  17977871 gttacacccaaatttatttaaaattttacaataataccaaaat 17977829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 19390695 - 19390653
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  19390695 gttacacccaaatttatttaaaattttacaataataccaaaat 19390653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 20115064 - 20115106
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  20115064 gttacacccaaatttatttaaaattttacaataataccaaaat 20115106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 21867107 - 21867065
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  21867107 gttacacccaaatttatttaaaattttacaataataccaaaat 21867065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 30787267 - 30787225
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  30787267 gttacacccaaatttatttaaaattttacaataataccaaaat 30787225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 39430382 - 39430341
Alignment:
Q  67 ttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  39430382 ttacacccaaatttatttaaaattttacaataataccaaaat 39430341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 15506634 - 15506463
Alignment:
Q  65 ggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnnaaaactttgatttaattaattatcactctaaa 164  Q
    |||||||||||||||||||||| |||||| |||| ||| |||||  |||||| ||||||         ||||| ||||||| ||| ||| ||||||||||    
T  15506634 ggttacacccaaatttacttaaaattttataataatacaaaaattgcccttttatataaattttctt-aaaacattgatttcattcattgtcactctaaa 15506536  T
Q  165 atttca-tcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 236  Q
    |||||| |||| |||||||||||||||||||| |||||||  ||||||||| |||||||||||| |||||||||    
T  15506535 atttcactcct-tttcacccacaaacaatcattaatgttcggtcaatctttatagaagattaaagagtgaatca 15506463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 37829759 - 37829698
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 194  Q
    |||| |||||||| ||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  37829759 aaaattttgatttcattcattatcactctaaaatttcactctctttcacccaccaacaatca 37829698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 42130988 - 42131034
Alignment:
Q  157 actctaaaatttcatcctctttcacccacaaacaatcatgaatgttc 203  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  42130988 actctaaaatttcatcatctttcacctacaaacaatcacgaatgttc 42131034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 7818405 - 7818345
Alignment:
Q  176 tttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatc 235  Q
    ||||||||||||||||||||||||||||| ||||| | | || ||||||||| ||||||||    
T  7818405 tttcacccacaaacaatcatgaatgttcagtcaatttctataaaagattaaagagtgaatc 7818345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 1536950 - 1536872
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatct 212  Q
    ||||| || |||| ||| ||| || |||||||| |||| ||| ||||||||||||| ||||||| |||||||||||||||    
T  1536950 aaaaccttaatttcattcattgtcgctctaaaacttcaccctatttcacccacaaa-aatcatggatgttcaatcaatct 1536872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 3875750 - 3875708
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  3875750 gttacacccaaatttatttaaaattttacaataataccaaaat 3875708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 7795268 - 7795234
Alignment:
Q  176 tttcacccacaaacaatcatgaatgttcaatcaat 210  Q
    ||||||||||||||||||||||||||||| |||||    
T  7795268 tttcacccacaaacaatcatgaatgttcagtcaat 7795234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 17445745 - 17445703
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  17445745 gttacacccaaatttatttaaaattttacaataataccaaaat 17445703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 20292593 - 20292639
Alignment:
Q  139 ttgatttaattaattatcactctaaaatttcatcctctttcacccac 185  Q
    ||||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  20292593 ttgatttcattcattatcactataaaattccatcctctttcacccac 20292639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 27767720 - 27767678
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  27767720 gttacacccaaatttatttaaaattttacaataataccaaaat 27767678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 35949587 - 35949545
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  35949587 gttacacccaaatttatttaaaattttacaataataccaaaat 35949545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 54202333 - 54202375
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  54202333 gttacacccaaatttatttaaaattttacaataataccaaaat 54202375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 56162476 - 56162518
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  56162476 gttacacccaaatttatttaaaattttacaataataccaaaat 56162518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 36309087 - 36309046
Alignment:
Q  67 ttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  36309087 ttacacccaaatttatttaaaattttacaataataccaaaat 36309046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 50621666 - 50621707
Alignment:
Q  67 ttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  50621666 ttacacccaaatttatttaaaattttacaataataccaaaat 50621707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 39677790 - 39677742
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaataaccct 114  Q
    |||||||| ||||||| |||| ||||||||||| ||||||||| |||||    
T  39677790 gttacacctaaatttatttaaaattttacaataataccaaaattaccct 39677742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 40524908 - 40524823
Alignment:
Q  142 atttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    ||||| || |||||| ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  40524908 atttatttcattatcgctctaaaatttcaccatttttcacccacaaacaatcatggatgttcaatcaatctctgtagaagattaaa 40524823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 41469499 - 41469593
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    ||||||||||||| ||| ||| | |||||||||||| | ||||||||||  ||||||||| ||||||||||||||||||| | ||||||||||||    
T  41469499 aaaactttgatttcattcattgttactctaaaattttaccctctttcacatacaaacaattatgaatgttcaatcaatctctatagaagattaaa 41469593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 34012732 - 34012810
Alignment:
Q  159 tctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 236  Q
    ||||||||||||||| ||| |||||||||||||||||  ||||||||||||||| | || ||||||||| |||||||||    
T  34012732 tctaaaatttcatccgcttacacccacaaacaatcatagatgttcaatcaatctctataaaagattaaagagtgaatca 34012810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 37544970 - 37544872
Alignment:
Q  139 ttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 236  Q
    ||||||| ||| ||| | |||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||  | || ||||||||| |||||||||    
T  37544970 ttgatttcattcattgttactctaaaatttcaccctctttcacccataaacaattatggatgttcaatcaatcactataaaagattaaagagtgaatca 37544872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 21202959 - 21203027
Alignment:
Q  159 tctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    ||||||||||||  || ||||||||||||||||||||| | ||||||||||||| | ||||| ||||||    
T  21202959 tctaaaatttcacactatttcacccacaaacaatcatggacgttcaatcaatctctatagaatattaaa 21203027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 3112204 - 3112162
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  3112204 gttacacccaaatttatttaaaattttacaataataccaaaat 3112162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 9741355 - 9741313
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  9741355 gttacacccaaatttatttaaaattttacaataataccaaaat 9741313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 12848443 - 12848501
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaataaccct-ttcatataa 123  Q
    |||||||| ||||||| |||| ||||||||||| ||||||||| ||||| |||||||||    
T  12848443 gttacacctaaatttatttaaaattttacaataataccaaaattaccctcttcatataa 12848501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 18676885 - 18676843
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  18676885 gttacacccaaatttatttaaaattttacaataataccaaaat 18676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 31588047 - 31588005
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  31588047 gttacacccaaatttatttaaaattttacaataataccaaaat 31588005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 42697409 - 42697451
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  42697409 gttacacccaaatttatttaaaattttacaataataccaaaat 42697451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 44508506 - 44508548
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  44508506 gttacacccaaatttatttaaaattttacaataataccaaaat 44508548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 47455053 - 47455095
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  47455053 gttacacccaaatttatttaaaattttacaataataccaaaat 47455095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 22114160 - 22114119
Alignment:
Q  186 aaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    ||||||||||| ||||||||||||||| | ||||||||||||    
T  22114160 aaacaatcatggatgttcaatcaatctctatagaagattaaa 22114119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 40525281 - 40525322
Alignment:
Q  186 aaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    ||||||||||| ||||||||||||||| | ||||||||||||    
T  40525281 aaacaatcatggatgttcaatcaatctctatagaagattaaa 40525322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 12726347 - 12726299
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaataaccct 114  Q
    ||||||||| |||||| |||| ||||||||||| ||||||||| |||||    
T  12726347 gttacacccgaatttatttaaaattttacaataataccaaaattaccct 12726299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 9263576 - 9263495
Alignment:
Q  156 cactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 236  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||| |||||| |||||||||    
T  9263576 cactctaaaatttcatcatctttcatccacaaacaatcatgaatgttcaatcaatctctatagaatattaaagagtgaatca 9263495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 45926300 - 45926129
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnnaaaactttgatttaatta-attatcactctaaa 164  Q
    |||||||| |||||||||||| | ||||||||| ||||||||| ||||||| ||| ||         ||||| || |||| |||  ||| ||||||| ||    
T  45926300 gttacacctaaatttacttaaaagtttacaataataccaaaattacccttttata-aaaaaaatcttaaaaccttaatttcatttcattgtcactctcaa 45926202  T
Q  165 atttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatt-aaaagtgaatca 236  Q
    ||| || |||||||||||| |||||||||||| ||||||||||||||| | ||||||||| || |||||||||    
T  45926201 attgcaccctctttcacccgcaaacaatcatgtatgttcaatcaatctctatagaagattgaagagtgaatca 45926129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 51547072 - 51547138
Alignment:
Q  161 taaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||| || | ||||||||||||    
T  51547072 taaaatttcaccctctttcacccacaaacaattatggatgttcaatcaagctatatagaagattaaa 51547138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 1702630 - 1702569
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 194  Q
    |||| |||||||| ||| ||| ||||||||||||||||  ||||||||||||| ||||||||    
T  1702630 aaaattttgatttcatttattgtcactctaaaatttcactctctttcacccaccaacaatca 1702569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 11335712 - 11335670
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  11335712 gttacacccaaatttatttaaaattttacaataataccaaaat 11335670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 11493732 - 11493690
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  11493732 gttacacccaaatttatttaaaattttacaataataccaaaat 11493690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 13556078 - 13556120
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  13556078 gttacacccaaatttatttaaaattttacaataataccaaaat 13556120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 17926314 - 17926272
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  17926314 gttacacccaaatttatttaaaattttacaataataccaaaat 17926272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 25730044 - 25730002
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  25730044 gttacacccaaatttatttaaaattttacaataataccaaaat 25730002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 25828678 - 25828720
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  25828678 gttacacccaaatttatttaaaattttacaataataccaaaat 25828720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 26770249 - 26770207
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  26770249 gttacacccaaatttatttaaaattttacaataataccaaaat 26770207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 37094276 - 37094234
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  37094276 gttacacccaaatttatttaaaattttacaataataccaaaat 37094234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 40359668 - 40359710
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  40359668 gttacacccaaatttatttaaaattttacaataataccaaaat 40359710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 48542676 - 48542634
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  48542676 gttacacccaaatttatttaaaattttacaataataccaaaat 48542634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 50490804 - 50490846
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  50490804 gttacacccaaatttatttaaaattttacaataataccaaaat 50490846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 52469557 - 52469515
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  52469557 gttacacccaaatttatttaaaattttacaataataccaaaat 52469515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 51546685 - 51546644
Alignment:
Q  186 aaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  51546685 aaacaattatgaatgttcaatcaatctctatagaagattaaa 51546644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 3994993 - 3994953
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaa 106  Q
    |||||||||||||||| |||| ||||||||||| |||||||    
T  3994993 gttacacccaaatttatttaaaattttacaataataccaaa 3994953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 17315020 - 17314940
Alignment:
Q  157 actctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 236  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||| || | ||||||| |||||||||    
T  17315020 actctaaaatttcactctctttcagccacaaacaatcatgaatgttcaatcaatctttataaaggattaaagagtgaatca 17314940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 26181103 - 26181157
Alignment:
Q  158 ctctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatct 212  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  26181103 ctctaaactttcactctctttcacccacaaacaatcatgaatgttcaatcaatct 26181157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 14253136 - 14253201
Alignment:
Q  172 cctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 236  Q
    ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||| |||||||||    
T  14253136 cctctttcacccacaaacaatcatggatgttcaatcaatctctataaaagattaaagagtgaatca 14253201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 6675217 - 6675297
Alignment:
Q  155 tcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 236  Q
    |||||||||||||| |  |||||||||| ||||| ||||||| ||||||||||||||| | |||||||||||| |||||||||    
T  6675217 tcactctaaaatttta--ctctttcaccaacaaataatcatggatgttcaatcaatctctatagaagattaaagagtgaatca 6675297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 26947181 - 26947258
Alignment:
Q  159 tctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatt-aaaagtgaatca 236  Q
    ||||||||||||  |||||||||||||||||||||||| || |||||||||||| | ||||||||| || |||||||||    
T  26947181 tctaaaatttcactctctttcacccacaaacaatcatggat-ttcaatcaatctctatagaagattgaagagtgaatca 26947258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 32173000 - 32173055
Alignment:
Q  139 ttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 194  Q
    ||||||| ||| ||| ||||||||||||||||  |||||||||||| |||||||||    
T  32173000 ttgatttcattcattgtcactctaaaatttcactctctttcacccagaaacaatca 32173055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 4169667 - 4169709
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  4169667 gttacacccaaatttatttaaaattttacaataataccaaaat 4169709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 4210396 - 4210438
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  4210396 gttacacccaaatttatttaaaattttacaataataccaaaat 4210438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 5545374 - 5545416
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  5545374 gttacacccaaatttatttaaaattttacaataataccaaaat 5545416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 8658990 - 8659032
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  8658990 gttacacccaaatttatttaaaattttacaataataccaaaat 8659032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 11590249 - 11590291
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  11590249 gttacacccaaatttatttaaaattttacaataataccaaaat 11590291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 17595993 - 17595951
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  17595993 gttacacccaaatttatttaaaattttacaataataccaaaat 17595951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 25144204 - 25144162
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  25144204 gttacactcaaatttacttaaaattttacaataataccaaaat 25144162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 32938530 - 32938488
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  32938530 gttacacccaaatttatttaaaattttacaataataccaaaat 32938488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 33489795 - 33489837
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  33489795 gttacacccaaatttatttaaaattttacaataataccaaaat 33489837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 33659676 - 33659718
Alignment:
Q  155 tcactctaaaatttcatcctctttcacccacaaacaatcatga 197  Q
    |||||||||| ||||| |||||||||||||||| |||||||||    
T  33659676 tcactctaaactttcaacctctttcacccacaagcaatcatga 33659718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 29880728 - 29880773
Alignment:
Q  139 ttgatttaattaattatcactctaaaatttcatcctctttcaccca 184  Q
    ||||||| ||||||| ||||||||||||| ||| ||||||||||||    
T  29880728 ttgatttcattaattgtcactctaaaattccattctctttcaccca 29880773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 742982 - 742938
Alignment:
Q  64 aggttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    ||||||||| |||||||| |||| ||||||||||| |||||||||    
T  742982 aggttacactcaaatttatttaaaattttacaataataccaaaat 742938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 13889191 - 13889151
Alignment:
Q  68 tacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||| |||||||||||| ||||||||||| |||||||||    
T  13889191 tacacctaaatttacttaaaattttacaataataccaaaat 13889151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 6733480 - 6733389
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatta 225  Q
    ||||| ||||||| ||| ||| |||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||    
T  6733480 aaaaccttgatttcattcattgtcactctaaaatttca-catctttcacccacaaataattatgaatgttcaatcaatctctatagaagatta 6733389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 3390956 - 3390914
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  3390956 gttacacccaaatttatttaaaattttacaataataccaaaat 3390914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 8936011 - 8935969
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  8936011 gttacacccaaatttatttaaaattttacaataataccaaaat 8935969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 15472791 - 15472749
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  15472791 gttacacccaaatttatttaaaattttacaataataccaaaat 15472749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 33570194 - 33570152
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  33570194 gttacacccaaatttatttaaaattttacaataataccaaaat 33570152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 35066168 - 35066126
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  35066168 gttacacccaaatttatttaaaattttacaataataccaaaat 35066126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 3802 - 3906
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatt-aaaagtg 231  Q
    ||||| ||||||| ||| ||| |||||||||||||||| || |||||| || |||||||| ||| ||| ||||||||||| | ||||||||| |||||||    
T  3802 aaaaccttgatttcattcattgtcactctaaaatttcacccgctttcatccgcaaacaattatggatggtcaatcaatctctatagaagattaaaaagtg 3901  T
Q  232 aatca 236  Q
    |||||    
T  3902 aatca 3906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 1848357 - 1848432
Alignment:
Q  152 ttatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 227  Q
    |||||||| ||||| |||| ||||||||| || || ||||||||| ||||||||||||| ||| ||||||||||||    
T  1848357 ttatcactttaaaacttcaccctctttcatccgcagacaatcatggatgttcaatcaatatttatagaagattaaa 1848432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 35979366 - 35979445
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatct 212  Q
    ||||| ||||||| ||| ||| |  ||||||||||||| ||| || |||||||||| ||||||| |||||||||||||||    
T  35979366 aaaaccttgatttcattcattgttgctctaaaatttcacccttttacacccacaaataatcatggatgttcaatcaatct 35979445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 32911140 - 32911088
Alignment:
Q  160 ctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatct 212  Q
    |||||||||||| |||||||| ||| ||||||||||  |||||||||||||||    
T  32911140 ctaaaatttcattctctttcatccaaaaacaatcatcgatgttcaatcaatct 32911088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 39713406 - 39713354
Alignment:
Q  142 atttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 194  Q
    |||| ||||||| ||||||||||||||||  ||||||||||||||||| ||||    
T  39713406 atttcattaattgtcactctaaaatttcaatctctttcacccacaaacgatca 39713354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 4006591 - 4006536
Alignment:
Q  139 ttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 194  Q
    ||||||| ||||||| ||||||||||||||||  ||||||||||||| ||| ||||    
T  4006591 ttgatttcattaattgtcactctaaaatttcactctctttcacccaccaacgatca 4006536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 16584424 - 16584467
Alignment:
Q  65 ggttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||||||||| |||||| |||| |||||||||    
T  16584424 ggttacacccaaatttacttaaaattttataataataccaaaat 16584467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 5458262 - 5458304
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  5458262 gttacacccaaatttatttaaaattttacaataataccaaaat 5458304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 8352382 - 8352424
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  8352382 gttacacccaaatttatttaaaattttacaataataccaaaat 8352424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 20818957 - 20818999
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  20818957 gttacacccaaatttatttaaaattttacaataataccaaaat 20818999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 25487346 - 25487304
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  25487346 gttacacccaaatttatttaaaattttacaataataccaaaat 25487304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 27719244 - 27719286
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  27719244 gttacacccaaatttatttaaaattttacaataataccaaaat 27719286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 29997496 - 29997538
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  29997496 gttacacccaaatttatttaaaattttacaataataccaaaat 29997538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 31097517 - 31097559
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  31097517 gttacacccaaatttatttaaaattttacaataataccaaaat 31097559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 33411047 - 33411089
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  33411047 gttacacccaaatttatttaaaattttacaataataccaaaat 33411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 35393643 - 35393601
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  35393643 gttacacccaaatttatttaaaattttacaataataccaaaat 35393601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 36781654 - 36781696
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  36781654 gttacacccaaatttatttaaaattttacaataataccaaaat 36781696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 38098906 - 38098864
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  38098906 gttacacccaaatttatttaaaattttacaataataccaaaat 38098864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 44704007 - 44704053
Alignment:
Q  139 ttgatttaattaattatcactctaaaatttcatcctctttcacccac 185  Q
    ||||||| ||| ||||||||||||||||||||  |||||||||||||    
T  44704007 ttgatttcattcattatcactctaaaatttcactctctttcacccac 44704053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 45084247 - 45084289
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  45084247 gttacacccaaatttatttaaaattttacaataataccaaaat 45084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 30655004 - 30655045
Alignment:
Q  67 ttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  30655004 ttacacccaaatttatttaaaattttacaataataccaaaat 30655045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 38167778 - 38167839
Alignment:
Q  133 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 194  Q
    |||| |||||||| ||| ||| ||||||||||||||||  ||||||||||||| ||| ||||    
T  38167778 aaaaatttgatttcattcattgtcactctaaaatttcactctctttcacccaccaacgatca 38167839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 32911245 - 32911201
Alignment:
Q  54 catgtattttaggttacacccaaatttacttaatattttacaata 98  Q
    |||||||||  |||||||| ||||||||||||| |||||||||||    
T  32911245 catgtatttatggttacacacaaatttacttaagattttacaata 32911201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 6569 - 6527
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  6569 gttacacccaaatttatttaaaattttacaataataccaaaat 6527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 27936 - 27894
Alignment:
Q  66 gttacacccaaatttacttaatattttacaatagtaccaaaat 108  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  27936 gttacacccaaatttatttaaaattttacaataataccaaaat 27894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University