View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17317_low_16 (Length: 256)
Name: NF17317_low_16
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46130249 - 46130489
Alignment:
| Q |
1 |
tatgggcattaggtaatattgctggtagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgtctctgttgtggaatcc |
100 |
Q |
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| T |
46130249 |
tatgggcattaggtaatattgctggtagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgtctctgttgtggaatcc |
46130348 |
T |
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| Q |
101 |
ttcttcaacagaaaaatctacatggaggattgctatatgggcttttgccaacgttattcctgggaagcttccactaactcttgaggatcaggttgggaaa |
200 |
Q |
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| T |
46130349 |
ttctgcaacagaaaaatctacatggaggattgctatatgggcttttgccaacgttattcctgggaagcttccactaactcttgaggatcaggttgggaaa |
46130448 |
T |
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| Q |
201 |
agtttgcaaggatagcatgtgcagtaaatttagcatatcct |
241 |
Q |
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| T |
46130449 |
agtttgcaaggatagcatgtgcagtaaatttagcatatcct |
46130489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46703033 - 46703270
Alignment:
| Q |
1 |
tatgggcattaggtaatattgctggtagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgtctctgttgtggaatcc |
100 |
Q |
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| T |
46703033 |
tatgggcattaggtaatattgctggcaattccctgaccgcaagggatcttgttttaaataatggtgcactttctccattattgtctctgttgtggaatcc |
46703132 |
T |
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| Q |
101 |
ttcttcaacagaaaaatctacatggaggattgctatatgggcttttgccaacgttattcctgggaagcttccactaactcttgaggatcaggttgggaaa |
200 |
Q |
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| T |
46703133 |
ttctacaa---aaaaatctacatggaggattgctatatgggcttttgtcaacattattcgtgaaaagcctcctctaactcttgaggatcaggttgggaaa |
46703229 |
T |
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| Q |
201 |
agtttgcaaggatagcatgtgcagtaaatttagcatatcct |
241 |
Q |
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| T |
46703230 |
actttgcaaggatagcatgtgcagtaaatttagcatatcct |
46703270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46124240 - 46124480
Alignment:
| Q |
1 |
tatgggcattaggtaatattgctggtagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgtctctgttgtggaatcc |
100 |
Q |
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||||||||||||||||||||||||| | ||| |||||| | |||| ||||||||||||||||||||||| ||||| |||||||| || |||||||||| |
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| T |
46124240 |
tatgggcattaggtaatattgctggcaattccctgaccgcaagggatattgttttaaatcatggtgcactttctccactattgtctttgatgtggaatcc |
46124339 |
T |
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| Q |
101 |
ttcttcaacagaaaaatctacatggaggattgctatatgggcttttgccaacgttattcctgggaagcttccactaactcttgaggatcaggttgggaaa |
200 |
Q |
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|||||||||| ||||||||||||||| ||||||| |||||||||| |||| | | || || |||| || ||||||||| || |||||||||||||| |
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| T |
46124340 |
ttcttcaacaaaaaaatctacatggaatattgctacatgggcttttttcaacttcactcgcggaaagcctcttctaactcttcagaatcaggttgggaaa |
46124439 |
T |
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| Q |
201 |
agtttgcaaggatagcatgtgcagtaaatttagcatatcct |
241 |
Q |
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| T |
46124440 |
aatttgcaaggatagcatgtgcagtaaatttagcatatcct |
46124480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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