View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17317_low_2 (Length: 393)
Name: NF17317_low_2
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 12675244 - 12675616
Alignment:
| Q |
15 |
attaagaaatgtacttgtataataatattacaagtctttgaagaatggtgcattttgttgtggactacgtccgattgtgaattattttcatggttccctt |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12675244 |
attaagaaatgtacttgtataataata---caagtctttgaagaatggtgcattttgttgtggactacgtccaattgtgaattattttcatggttccctt |
12675340 |
T |
|
| Q |
115 |
gctgattgctgaatgaatcaacatatattagtattgcattcatctacattaaaaacattgaatatattttt--gtcctgaactagttgata----nnnnn |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12675341 |
gctgattgctgaatgaatcaacatatattagtattgcattcatcttcattaaaaacattgaatatattttttagtcctgaactagttgatatattttttt |
12675440 |
T |
|
| Q |
209 |
nnnnaatatatcggtattttaattattgttcttgttgttattaaataactnnnnnnnntatatacacgcgtgaccactacggaataccaggtttcacgag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12675441 |
ttttaatatatcggtattttaattattgttcttgttgttattaaataactaaaaaaaatatatacacgcgtgaccactacggaataccaggtttcacgag |
12675540 |
T |
|
| Q |
309 |
tctggtatcaacaagatacaatttttattctcgtaataggtgcttttgtttttgtctttttgcaaatatacctatg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12675541 |
actggtatcaacaagatacaatttttattctcgtaataggtgcttttgtttttgtctttttgcaaatatacctatg |
12675616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University