View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17317_low_3 (Length: 383)
Name: NF17317_low_3
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_3 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 52097697 - 52098052
Alignment:
| Q |
16 |
atgactacaatgagcaatgaagcactgatacgttgacatttataataaattgagaaaataaaataattaaatgtaaccatgtgtttccgtgttcgacacc |
115 |
Q |
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| T |
52097697 |
atgacaacaatgagcaatgaagcactgatacgttgacatttataataaattgagaaaataaaataattaaatgtaaccatgtgtgtccgtgttcgacatt |
52097796 |
T |
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| Q |
116 |
gacacatgttcgacatcaggcatacattcaatttgaagtgtcagtgttagataaacaataagcgacatgtatgtatgataccagcaatagtataagatgg |
215 |
Q |
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| T |
52097797 |
gacacatgttcgacatcaggcatacattcaatttgaagtgtcaatgttagataaacaataagcgacatatatgtatgataccagcaatagtataagatgg |
52097896 |
T |
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| Q |
216 |
gaaattattaagagcatacctcaaaagtccattcacataaagtaagaacttcagaattctttatggttaatagtatttcatcaaaatcttgagcactcaa |
315 |
Q |
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| T |
52097897 |
gaaattattgagagcatacctcaaaagtccattcacataaagtaagaacttcagaattctttatggttaatagtatttcatcaaaatcttgagcactcaa |
52097996 |
T |
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| Q |
316 |
atccctgcagcttaggccttgtctgaaatcaaggatggcatggcacaagttgaaat |
371 |
Q |
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| T |
52097997 |
atccctgcagcttaggccttgtctgaaatcaaggatggcatggcacaagttgaaat |
52098052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 194 - 371
Target Start/End: Original strand, 52090779 - 52090957
Alignment:
| Q |
194 |
taccagcaatagtataagat-gggaaattattaagagcatacctcaaaagtccattcacataaagtaagaacttcagaattctttatggttaatagtatt |
292 |
Q |
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| T |
52090779 |
tacctgcaatagtataagattgggaaattatcgaaaacatacttcaaaagtccattcacataaagtaagaattttagaattctttatggtcagtagtgtt |
52090878 |
T |
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| Q |
293 |
tcatcaaaatcttgagcactcaaatccctgcagcttaggccttgtctgaaatcaaggatggcatggcacaagttgaaat |
371 |
Q |
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| T |
52090879 |
tcatcaaaatcttgagcactcaaatccctacaacttagcccttatctaaaatcaaggatggcatgacacaagttgaaat |
52090957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 151452 - 151414
Alignment:
| Q |
57 |
ataataaattgagaaaataaaataattaaatgtaaccat |
95 |
Q |
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| T |
151452 |
ataataatttgagaaaataaaataattaaatgtaaccat |
151414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 33697200 - 33697155
Alignment:
| Q |
50 |
gacatttataataaattgagaaaataaaataattaaatgtaaccat |
95 |
Q |
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| T |
33697200 |
gacattgataataatttgagaaaataaaataattgaatataaccat |
33697155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 1527865 - 1527918
Alignment:
| Q |
38 |
cactgatacgttgacatttataataaattgagaaaataaaataattaaatgtaa |
91 |
Q |
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| T |
1527865 |
cactgatacgtcgacatttattataatttgagaaaataataaaattgaatgtaa |
1527918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 39120435 - 39120395
Alignment:
| Q |
38 |
cactgatacgttgacatttataataaattgagaaaataaaa |
78 |
Q |
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| T |
39120435 |
cactgacacgttgacactaataataaattgagaaaataaaa |
39120395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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