View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17317_low_6 (Length: 329)
Name: NF17317_low_6
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 24415726 - 24415431
Alignment:
| Q |
15 |
aatatcaaactacaaatttgttggaactcacttctttgaagggagttatgcatcaatcaacttgtatattattaaatggccagtagtataatccatccct |
114 |
Q |
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| T |
24415726 |
aatatcaaactacaaatttgttggaactcacttctttgaagggagttatgcatcaatcaacttgtatattattaaatggccagtagtataatccatccct |
24415627 |
T |
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| Q |
115 |
taaatatcttaatccctatctaacaactctgaaaccaccactattacattacatgaaccaatgtacaaccccaaataaagtaagcattattaaggattaa |
214 |
Q |
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| T |
24415626 |
taaatatcttaatccctatctaacaactctgaaaccaccactattacattacatgaaccaatgtacaaccccaaataaagtaagcattattaaggattaa |
24415527 |
T |
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| Q |
215 |
taacatcattaaccttttcctctaattttctcacttatgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagcta |
310 |
Q |
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| T |
24415526 |
taacaccattaaccttttcctctaattttctcacttatgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagcta |
24415431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 52 - 310
Target Start/End: Original strand, 24418840 - 24419094
Alignment:
| Q |
52 |
gaagggagttatgcatcaatcaacttgtatattattaaatggccagtagtataatccatcccttaaatatcttaatccctatctaacaactctgaaacca |
151 |
Q |
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| T |
24418840 |
gaagcgagttatgcatcaatcaacttgtatatgattaaatggcttgtagtataatccatcccttaaatatcttaatgcctatctaacaactctgaaa--a |
24418937 |
T |
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| Q |
152 |
ccactattacattacatgaaccaatgtacaaccccaaataaagtaagcattattaaggattaataacatcattaaccttttcctctaattttctcactta |
251 |
Q |
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| T |
24418938 |
ccg-tag-acattacatgaaccaacgtacagccccaaataaagtaagcattactaagtattaataacatcattaaccttttccactaattttctctctta |
24419035 |
T |
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| Q |
252 |
tgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagcta |
310 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
24419036 |
tgataccttcaaatgatccaacaaatccaaccattgtgacaagaaagcaagcaaagcta |
24419094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 24380542 - 24380397
Alignment:
| Q |
164 |
tacatgaaccaatgtacaaccccaaataaagtaagcattattaaggattaataacatcattaaccttttcctctaattttctcacttatgattccttcaa |
263 |
Q |
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| T |
24380542 |
tacatgaaccaatctacaaccc-atataaagtacccattattaagtggtaataatgtcattaaccttttcaactaagtttctcatgtatgattccttcaa |
24380444 |
T |
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| Q |
264 |
atgatccaacaaatccaaccatggtgacaaggaagcaagcaaagcta |
310 |
Q |
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| T |
24380443 |
atgatccaattaatcccatcattgtaacaagaaagcaagcaaagcta |
24380397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 24402691 - 24402615
Alignment:
| Q |
234 |
ctctaattttctcacttatgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagcta |
310 |
Q |
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||||||||||||||| || ||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||| |
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| T |
24402691 |
ctctaattttctcacgtacgattccttcaaatgacccaacaaatccaactattgtgacaagaaagcaagcaaagcta |
24402615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 42363224 - 42363190
Alignment:
| Q |
241 |
tttctcacttatgattccttcaaatgatccaacaa |
275 |
Q |
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| T |
42363224 |
tttctcacttatgattccttcaagtgatccaacaa |
42363190 |
T |
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