View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17317_low_9 (Length: 314)
Name: NF17317_low_9
Description: NF17317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17317_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 30783475 - 30783568
Alignment:
| Q |
207 |
taggtcaatcattaagtgtacctccaatagatgtcctatgttgacgacaaatgcaccaggaagaggctcaaccgtgatccactttccatccttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30783475 |
taggtcaatcattaagtgtacctccaatagatgtcctatgttgacgacaaatgcaccaggaagaggctcaaccgtgatccactttccatccttt |
30783568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 30783410 - 30783445
Alignment:
| Q |
7 |
atgataaagtacataaataacaaagatacataatag |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30783410 |
atgataaagtacataaataacaaagatacataatag |
30783445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 30740182 - 30740256
Alignment:
| Q |
222 |
gtgtacctccaatagatgtcctatgttgacgacaaatgcaccaggaagaggctcaaccgtgatccactttccatc |
296 |
Q |
| |
|
|||||||||||| | ||| ||||| |||| |||||||||| || |||||||||||| ||||||| |||||||| |
|
|
| T |
30740182 |
gtgtacctccaacacatggcctatattgatgacaaatgcatgagtaagaggctcaacattgatccaatttccatc |
30740256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 19649643 - 19649693
Alignment:
| Q |
124 |
ttagtctatgttttagaccatatacatcaattactcaataaatcttaaaaa |
174 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
19649643 |
ttagtctatattttagaccgaatacatcaattactcaatgaatctaaaaaa |
19649693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 5002208 - 5002253
Alignment:
| Q |
128 |
tctatgttttagaccatatacatcaattactcaataaatcttaaaa |
173 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
5002208 |
tctatattttagacaagatacatcaattactcaataaatctaaaaa |
5002253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 8793803 - 8793759
Alignment:
| Q |
124 |
ttagtctatgttttagaccatatacatcaattactcaataaatct |
168 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||||| ||||| |
|
|
| T |
8793803 |
ttagtctatattatagaccaaatacatcaattactcaatgaatct |
8793759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University