View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17318_high_13 (Length: 470)
Name: NF17318_high_13
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_13 |
 | |
|
| [»] scaffold0061 (2 HSPs) |
| | |
|
| [»] scaffold1043 (1 HSPs) |
| | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
| [»] scaffold0170 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 34488616 - 34488168
Alignment:
| Q |
12 |
aattctgtcggtgagccggttaatgacgggcttgtttgttgtatgcttctgatcattcgttgttgaggaaactcttttgtc---acgtcatacaagatct |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
34488616 |
aattccgtcggtgagccggttaatgacgggcttgttcgttgtatgcttttgatcattcgttgttgacgaaactcttttgtcctaacgtcgtacaagatct |
34488517 |
T |
|
| Q |
109 |
taaaatcaggtatggggcgagagaagagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34488516 |
taaaatcaggtatggggcgagagaagagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatatttcccaaaattgatttggggctca |
34488417 |
T |
|
| Q |
209 |
ctgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34488416 |
ctgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgat |
34488317 |
T |
|
| Q |
309 |
taatttaaattacgttgaatgtgtgttaattgatgtcatgaataaattttatgttgtgcccatgtttgatctgctgcatttattctaattgatgaattat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34488316 |
taatttaaattacgttgaatgtgtgttaattgatgtcatgaataaattttatgttgtgcccatgtttgatctgctgcatttattctaattgatgaattat |
34488217 |
T |
|
| Q |
409 |
tcgatgatgaatataaaagtgatgttgaatcttattgaaatgaattttc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34488216 |
tcgatgatgaatataaaagtgatgttgaatcttattgaaatgaattttc |
34488168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 22394995 - 22395131
Alignment:
| Q |
181 |
atattttccaaaattgatttggggctcactgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagag |
280 |
Q |
| |
|
|||||| ||||| || ||| ||||||| |||||| |||| ||||||||| ||| |||||| | |||||||||||| ||||| |||| ||| |||||||| |
|
|
| T |
22394995 |
atatttcccaaagttcattcggggctccctgcgacggttatagcccttcgagagaataatgaattaatgtgaaaatttagaggtgg-gaggttaaaagaa |
22395093 |
T |
|
| Q |
281 |
gaattagaaacattattaaggtcttgattaatttaaat |
318 |
Q |
| |
|
||||||||||||||||||| || ||| || |||||||| |
|
|
| T |
22395094 |
gaattagaaacattattaaagtgttgcttgatttaaat |
22395131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 357
Target Start/End: Complemental strand, 14747204 - 14746976
Alignment:
| Q |
127 |
gagagaagagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagccc |
226 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||| | ||| ||||||| |||||| |||| || ||| ||||||||| ||| || ||||| || |
|
|
| T |
14747204 |
gagagaagagttcgagatcatgagtgtaaattaattgagaagaacgggaaagtcgtatttttcaaagttcattcggggctcaccacgacggatgtagtcc |
14747105 |
T |
|
| Q |
227 |
ttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttga |
326 |
Q |
| |
|
|| ||| ||||||| |||||||| ||| ||||| |||| ||| |||||||| ||||||||||||||||||||| ||| || |||||||||| | ||| |
|
|
| T |
14747104 |
tttgagaggataattaattaatgtgcaaatttagatgtgg-gaggttaaaagaataattagaaacattattaaggtgttgcttgatttaaattatg-tga |
14747007 |
T |
|
| Q |
327 |
atgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|| |||| || |||| |||||| |||||||| |
|
|
| T |
14747006 |
atatgtggtatttgaagtcatggataaattt |
14746976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 342
Target Start/End: Original strand, 1779505 - 1779602
Alignment:
| Q |
244 |
ttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttgaatgtgtgttaattgat |
342 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||||| |||| | |||| ||||| |||||||||| |||||| ||| ||| |||||||| |||||||| |
|
|
| T |
1779505 |
ttaatgtaaaaatttagaagtg-tgagattaaaagatgaataaaaaactttattttggtcttgattgatttaatttatgttcaatgtgtggtaattgat |
1779602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 320
Target Start/End: Complemental strand, 7848978 - 7848860
Alignment:
| Q |
202 |
gggctcactgcgatggttgtagcccttcaagaaaataattagtt-aatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaag |
300 |
Q |
| |
|
||||| || |||| ||||||||||||| ||| |||||||| || |||||| ||| ||||||||| ||| |||||||| ||||||||||||||||| | |
|
|
| T |
7848978 |
gggcttaccgcgacggttgtagcccttggagagaataattaatttaatgtgtaaatttagaagtgc-gaggttaaaagatgaattagaaacattattggg |
7848880 |
T |
|
| Q |
301 |
gtcttgattaatttaaatta |
320 |
Q |
| |
|
|| ||| || |||||||||| |
|
|
| T |
7848879 |
gtgttgtttgatttaaatta |
7848860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 127 - 456
Target Start/End: Original strand, 7902342 - 7902669
Alignment:
| Q |
127 |
gagagaagagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagccc |
226 |
Q |
| |
|
|||||||||||||||||| |||||||| | || ||||| | ||| ||||||| |||||| |||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
7902342 |
gagagaagagttcgagtacatgagtgtaaaatgattgtgacgaacgggaaagtcatattt-ccaaaattgattcggggctcactgcgatggttgcagccc |
7902440 |
T |
|
| Q |
227 |
ttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttga |
326 |
Q |
| |
|
| ||| |||||||| |||||||| ||| |||||| ||| |||||||||| || |||||||||||||||||||||||||||| |||||||||| | ||| |
|
|
| T |
7902441 |
cttgagagaataattaattaatgtgcaaatttagaaatgg-gagattaaaacagtaattagaaacattattaaggtcttgattgatttaaattatgctga |
7902539 |
T |
|
| Q |
327 |
atgtgtgttaattgatgtcatgaataaattttatgttgtgcccatgtttgatctgctgcatttattctaattgatgaattattcgatgatgaatataaaa |
426 |
Q |
| |
|
| |||| ||||||||| |||||||||||||||||||| || ||||||||| ||||| | | | ||| |||||||||||||| ||| || || |||| |
|
|
| T |
7902540 |
gtatgtggtaattgatgccatgaataaattttatgttgggcttatgtttgatttgctgtaatgactctgattgatgaattatttgataattgatgtaaat |
7902639 |
T |
|
| Q |
427 |
gtgatgttgaatcttattgaaatgaatttt |
456 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |
|
|
| T |
7902640 |
gtgatgttgactcttgttgaaatgaatttt |
7902669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 128 - 400
Target Start/End: Complemental strand, 26707742 - 26707478
Alignment:
| Q |
128 |
agagaagagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagccct |
227 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||| || ||||| |||||||||||||| || || |||| |||| | |||||| |||| |
|
|
| T |
26707742 |
agagaagagttcgagtacatgagt------taattgtgatgaacgg-aaagcagtattttccaaaattcatacggcgctcgctgcagttgttgtatccct |
26707650 |
T |
|
| Q |
228 |
tcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttgaa |
327 |
Q |
| |
|
| ||| ||||||| |||||||| ||| || ||| || ||||||| |||||| ||||||| ||| |||||||||||||||| |||||||||| ||||| |
|
|
| T |
26707649 |
ttgagaggataattaattaatgtgcaaatttggaattg-tgagatttaaagagaaattagatacaatattaaggtcttgattgatttaaattatcttgaa |
26707551 |
T |
|
| Q |
328 |
tgtgtgttaattgatgtcatgaataaattttatgttgtgcccatgtttgatctgctgcatttattctaattga |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||| ||||| |
|
|
| T |
26707550 |
cttgtggtaattgatgtcatgaataaattttatgttgtggtcatgtttgatatgctgcaatgattctgattga |
26707478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 357
Target Start/End: Original strand, 24315765 - 24315992
Alignment:
| Q |
127 |
gagagaagagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagccc |
226 |
Q |
| |
|
|||||||||||||||| |||||||| | ||| || ||||| ||||||| ||||||||||| || ||| ||| ||||| || | || |||||||| |
|
|
| T |
24315765 |
gagagaagagttcgagatcatgagtgtaaattaactgagatgaacgggaaagtcgtattttccaaagttcattcggg-ctcaccgcaacggatgtagccc |
24315863 |
T |
|
| Q |
227 |
ttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttga |
326 |
Q |
| |
|
|| ||| |||||||| |||||||| ||| ||||| |||| ||| |||||||| |||||||||||||||||||||| ||| || |||||||||| | ||| |
|
|
| T |
24315864 |
tttgagagaataattaattaatgtgcaaatttagacgtgg-gaggttaaaagaagaattagaaacattattaaggtgttgcttgatttaaattatg-tga |
24315961 |
T |
|
| Q |
327 |
atgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|| |||| || |||| |||||| |||||||| |
|
|
| T |
24315962 |
atatgtggtatttgaagtcatggataaattt |
24315992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 302
Target Start/End: Complemental strand, 22522194 - 22522066
Alignment:
| Q |
173 |
ggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagat |
272 |
Q |
| |
|
||||||| |||||| ||||| || ||| |||||| |||||| ||||||| ||||| || | |||||||| |||||||| ||| ||||| ||| |||| | |
|
|
| T |
22522194 |
ggaaagccatatttcccaaagttcattcggggcttgctgcgacggttgtaaccctttaaaagaataattaattaatgtgcaaatttagacgtg-tgaggt |
22522096 |
T |
|
| Q |
273 |
taaaagaggaattagaaacattattaaggt |
302 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |
|
|
| T |
22522095 |
taaaagaggtattagaaatattattaaggt |
22522066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 357
Target Start/End: Original strand, 23246508 - 23246657
Alignment:
| Q |
210 |
tgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgag----attaaaagaggaattagaaacattattaaggtctt |
305 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||| |||||||| ||| ||||| || ||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
23246508 |
tgcgatggttgtagtcctttgagagaataattaattaatgtgcaaatttagatgt-gtgaggttaattaaaaggggaattagaaacattattaaggtgtt |
23246606 |
T |
|
| Q |
306 |
gattaatttaaattacgttgaatgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|||| ||| |||||| | ||||| |||| || || | |||||| |||||||| |
|
|
| T |
23246607 |
gattgattgaaattatg-tgaatatgtgatatttaaagtcatggataaattt |
23246657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 452
Target Start/End: Complemental strand, 26707452 - 26707396
Alignment:
| Q |
396 |
attgatgaattattcgatgatgaatataaaagtgatgttgaatcttattgaaatgaa |
452 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
26707452 |
attgaagaattattcgatgatttatataaatgtgatgttgaatcttgttgaaatgaa |
26707396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 357
Target Start/End: Original strand, 16122 - 16366
Alignment:
| Q |
113 |
atcaggtatggggcgagaga--agagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctcact |
210 |
Q |
| |
|
||||||||||||| |||||| |||||||||| |||||||| | ||| || |||| |||||||| ||||||||||| || ||| |||||| || |
|
|
| T |
16122 |
atcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaactgagttgaacgggaaagccgtattttccaaagttcattcggggcttacc |
16221 |
T |
|
| Q |
211 |
gcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgatta |
310 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||| |||||||| ||| ||||| | | ||| |||||||| |||||||||||||||||||||| ||| || |
|
|
| T |
16222 |
gcgacggttgtagccctttgagagaataattaattaatgtgcaaatttagacat-gagaggttaaaagaagaattagaaacattattaaggtgttgcttg |
16320 |
T |
|
| Q |
311 |
atttaaattacgttgaatgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|||||||||| | ||||| |||| || |||| |||||| |||||||| |
|
|
| T |
16321 |
atttaaattatg-tgaatatgtgatatttgaagtcatggataaattt |
16366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 357
Target Start/End: Original strand, 25180 - 25424
Alignment:
| Q |
113 |
atcaggtatggggcgagaga--agagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctcact |
210 |
Q |
| |
|
||||||||||||| |||||| |||||||||| |||||||| | ||| || |||| |||||||| ||||||||||| || ||| |||||| || |
|
|
| T |
25180 |
atcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaactgagttgaacgggaaagccgtattttccaaagttcattcggggcttacc |
25279 |
T |
|
| Q |
211 |
gcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgatta |
310 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||| |||||||| ||| ||||| | | ||| |||||||| |||||||||||||||||||||| ||| || |
|
|
| T |
25280 |
gcgacggttgtagccctttgagagaataattaattaatgtgcaaatttagacat-gagaggttaaaagaagaattagaaacattattaaggtgttgcttg |
25378 |
T |
|
| Q |
311 |
atttaaattacgttgaatgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|||||||||| | ||||| |||| || |||| |||||| |||||||| |
|
|
| T |
25379 |
atttaaattatg-tgaatatgtgatatttgaagtcatggataaattt |
25424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 166 - 357
Target Start/End: Original strand, 16067571 - 16067760
Alignment:
| Q |
166 |
atgaatgggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtg |
265 |
Q |
| |
|
||||| ||||||||| ||||| ||||| || | ||||||||| |||| ||||||||||||| || |||||||| |||||||| ||| ||||| ||| |
|
|
| T |
16067571 |
atgaacgggaaagctgtatttcccaaagttcttacggggctcaccgcgacggttgtagccctttgagggaataattaattaatgtgcaaatttagacgtg |
16067670 |
T |
|
| Q |
266 |
gtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttgaatgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
| ||| |||||||| |||||||||||||||||||||| ||| || |||||||||| | ||||| |||| || |||| |||||| ||| |||| |
|
|
| T |
16067671 |
g-gaggttaaaagaagaattagaaacattattaaggtgttgcttgatttaaattatg-tgaatatgtggtatttgaagtcatggatagattt |
16067760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1043 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1043
Description:
Target: scaffold1043; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 357
Target Start/End: Original strand, 75 - 228
Alignment:
| Q |
202 |
gggctcactgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaagg |
301 |
Q |
| |
|
||||| ||||||| || |||||| ||| ||| |||||||| |||||||| ||| ||||| |||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
75 |
gggcttactgcgacggatgtagctctttgagagaataattatttaatgtgcaaatttagacgtgg-gaggttaaaagaagaattagaaacattattaagg |
173 |
T |
|
| Q |
302 |
tcttgattaatttaaattacgttgaatgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
| ||| || |||||||||| | ||||| |||| || |||| |||||| |||||||| |
|
|
| T |
174 |
tgttgcttgatttaaattatg-tgaatatgtggtatttgaagtcatggataaattt |
228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 357
Target Start/End: Complemental strand, 17420027 - 17419888
Alignment:
| Q |
216 |
ggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaattta |
315 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||| ||| ||||| |||| ||| |||||||| |||||||||||||||||||||| ||| || |||| |
|
|
| T |
17420027 |
ggttgtagccctttgagagaataattaattaatgtgcaaatttagacgtgg-gaggttaaaagaagaattagaaacattattaaggtgttgcttgatttg |
17419929 |
T |
|
| Q |
316 |
aattacgttgaatgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
||||| | ||||| |||| || |||| |||||| |||||||| |
|
|
| T |
17419928 |
aattatg-tgaatatgtggtatttgaagtcatggataaattt |
17419888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 201 - 357
Target Start/End: Original strand, 19727120 - 19727274
Alignment:
| Q |
201 |
ggggctcactgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaag |
300 |
Q |
| |
|
||||||||| |||| ||||||||||||| || |||| ||| |||||||| ||| ||||| |||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
19727120 |
ggggctcaccgcgacggttgtagccctttgagggaatatttaattaatgtgcaaatttagacgtgg-gaggttaaaagaagaattagaaacattattaag |
19727218 |
T |
|
| Q |
301 |
gtcttgattaatttaaattacgttgaatgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|| ||| || |||||||||| | ||||| |||| || |||| |||||| ||| |||| |
|
|
| T |
19727219 |
gtgttgcttgatttaaattatg-tgaatatgtggtatttgaagtcatggatagattt |
19727274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 6821977 - 6821877
Alignment:
| Q |
198 |
tttggggctcactgcgatggttgtagcccttcaagaaaataattag-ttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattat |
296 |
Q |
| |
|
||||||| |||| |||| ||||||||||||| ||| ||| |||| |||||||| ||| ||||||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
6821977 |
tttggggttcaccgcgacggttgtagcccttggagagaatgattaaattaatgtgcaaatttagaagtgc-gaggttaaaagatgaattagaaacattat |
6821879 |
T |
|
| Q |
297 |
ta |
298 |
Q |
| |
|
|| |
|
|
| T |
6821878 |
ta |
6821877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 235 - 431
Target Start/End: Complemental strand, 19020725 - 19020532
Alignment:
| Q |
235 |
aataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttgaatgtgtgt |
334 |
Q |
| |
|
|||||||| |||||||| ||| ||||| ||| |||| |||||||||||||||||| |||||||| ||| ||| || |||||||||| | ||||| |||| |
|
|
| T |
19020725 |
aataattaattaatgtgcaaatttagacgtg-tgaggttaaaagaggaattagaatcattattatggtgttgcttgatttaaattatg-tgaatatgtgg |
19020628 |
T |
|
| Q |
335 |
taattgatgtcatgaataaattttatgttgtgcccatgtttgatctgctgcatttattctaattgatgaattattcgatgatgaatataaaagtgat |
431 |
Q |
| |
|
|| |||| |||||| ||||||||| || ||||| |||| ||||| ||| ||| | ||| |||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
19020627 |
tatttgaagtcatggataaattttgtg-tgtgctcatgcttgatttgccgcaatcatttggattgattaattattcaatgattgatataaatgtgat |
19020532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 357
Target Start/End: Original strand, 25755861 - 25756005
Alignment:
| Q |
211 |
gcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgatta |
310 |
Q |
| |
|
|||| ||||||||||||| || |||||||| |||||||| ||| ||||| ||| || |||||||| |||||||||||||||||||||| ||| || |
|
|
| T |
25755861 |
gcgacggttgtagccctttgagggaataattaattaatgtgcaaatttagacgtgagaag-ttaaaagaagaattagaaacattattaaggtgttgcttg |
25755959 |
T |
|
| Q |
311 |
atttaaattacgttgaatgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|||||||||| ||| ||| |||| || |||| |||||| |||||||| |
|
|
| T |
25755960 |
atttaaattatgtt-aatatgtggtatttgaagtcatggataaattt |
25756005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 357
Target Start/End: Complemental strand, 25792471 - 25792244
Alignment:
| Q |
127 |
gagagaagagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagccc |
226 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||| ||||| ||||| || ||||||||||| || ||| ||||| || || | ||||| ||||| |
|
|
| T |
25792471 |
gagagaagagttcgagatcatgagtgtaaattaattgagatgaacgggaa-gccgtattttccaaagttcattcggggcccatcgcaacggttgcagccc |
25792373 |
T |
|
| Q |
227 |
ttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttga |
326 |
Q |
| |
|
|| || |||||||| |||||||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||| ||| || |||||||||| ||| | |
|
|
| T |
25792372 |
tttgagggaataattaattaatgtgcaaatttagacgtgagaag-ttaaaagaagaatttgaaacattattaaggtgttgcttgatttaaattatgtt-a |
25792275 |
T |
|
| Q |
327 |
atgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|| ||| || |||| |||||| |||||||| |
|
|
| T |
25792274 |
atatgtagtatttgaagtcatggataaattt |
25792244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 357
Target Start/End: Complemental strand, 15639 - 15411
Alignment:
| Q |
127 |
gagagaagagttcgagtaaatgagtgttatataattgtaatgaatgggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagccc |
226 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||| | ||| ||||||| |||||| |||| || ||| ||||||||| ||| || ||||| || |
|
|
| T |
15639 |
gagagaagagttcgagatcatgagtgtaaattaattgagaagaacgggaaagtcgtatttttcaaagttcattcggggctcaccacgacggatgtagtcc |
15540 |
T |
|
| Q |
227 |
ttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttga |
326 |
Q |
| |
|
|| ||| ||||||| |||||||| ||| ||||| |||| ||| |||||||| ||||||||||||||||||||| ||| || |||||||||| | ||| |
|
|
| T |
15539 |
tttgagaggataattaattaatgtgcaaatttagatgtgg-gaggttaaaagaataattagaaacattattaaggtgttgcttgatttaaattatg-tga |
15442 |
T |
|
| Q |
327 |
atgtgtgttaattgatgtcatgaataaattt |
357 |
Q |
| |
|
|| |||| || |||| |||||| |||||||| |
|
|
| T |
15441 |
atatgtggtatttgaagtcatggataaattt |
15411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 18293 - 18164
Alignment:
| Q |
169 |
aatgggaaagctatattttccaaaattgatttggggctcactgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtg |
268 |
Q |
| |
|
|||||||||||||||||| |||| || ||| ||||||||| |||| ||||||||||||| || |||||||| |||||||| ||| ||||| || | | |
|
|
| T |
18293 |
aatgggaaagctatatttctcaaagttcattcggggctcaccgcgacggttgtagccctttgagggaataattaattaatgtgcaaatttagacgt-gag |
18195 |
T |
|
| Q |
269 |
agattaaaagaggaattagaaacattattaag |
300 |
Q |
| |
|
|| |||||| | |||||||||||||||||||| |
|
|
| T |
18194 |
aggttaaaa-aagaattagaaacattattaag |
18164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 143666 - 143552
Alignment:
| Q |
201 |
ggggctcactgcgatggttgtagcccttcaagaaaataattagttaatgtgaaaagttagaagtggtgagattaaaagaggaattagaaacattattaag |
300 |
Q |
| |
|
||||||||| |||| ||||||||||||| || |||||||| |||||||| ||| ||||| |||| ||| |||||| | |||||||||||||||||||| |
|
|
| T |
143666 |
ggggctcaccgcgacggttgtagccctttgagggaataattaattaatgtgcaaatttagacgtgg-gaggttaaaataagaattagaaacattattaag |
143568 |
T |
|
| Q |
301 |
gtcttgattaatttaa |
316 |
Q |
| |
|
|| ||| || |||||| |
|
|
| T |
143567 |
gtgttgcttgatttaa |
143552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 17811625 - 17811694
Alignment:
| Q |
272 |
ttaaaagaggaattagaaacattattaaggtcttgattaatttaaattacgttgaatgtgtgttaattgat |
342 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
17811625 |
ttaaaagatgaattagaaat-ttattaaaatcttgattgatttaaattatgttgaatgtgtggtaattgat |
17811694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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