View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_high_15 (Length: 445)

Name: NF17318_high_15
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_high_15
NF17318_high_15
[»] chr7 (2 HSPs)
chr7 (16-438)||(48892483-48892899)
chr7 (16-53)||(33928490-33928527)
[»] chr8 (6 HSPs)
chr8 (16-226)||(9621926-9622136)
chr8 (154-209)||(5843121-5843176)
chr8 (163-209)||(5849872-5849918)
chr8 (163-209)||(5921241-5921287)
chr8 (163-209)||(5984661-5984707)
chr8 (148-206)||(7195365-7195423)
[»] chr4 (7 HSPs)
chr4 (118-209)||(52071704-52071795)
chr4 (22-71)||(27808559-27808608)
chr4 (136-209)||(50200928-50201001)
chr4 (24-65)||(50200020-50200061)
chr4 (147-209)||(30007246-30007308)
chr4 (145-219)||(31939598-31939672)
chr4 (145-219)||(31999896-31999970)
[»] chr3 (3 HSPs)
chr3 (22-68)||(44674748-44674794)
chr3 (14-53)||(33695859-33695898)
chr3 (118-209)||(44674039-44674130)
[»] chr6 (2 HSPs)
chr6 (16-53)||(3911866-3911903)
chr6 (145-219)||(3910640-3910714)
[»] chr1 (3 HSPs)
chr1 (145-206)||(33732203-33732264)
chr1 (145-209)||(16138907-16138971)
chr1 (148-204)||(45605862-45605918)
[»] chr2 (3 HSPs)
chr2 (141-206)||(13342987-13343052)
chr2 (24-65)||(13344897-13344938)
chr2 (148-209)||(27172787-27172848)
[»] chr5 (2 HSPs)
chr5 (18-62)||(1318462-1318506)
chr5 (22-66)||(5113881-5113925)


Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 48892483 - 48892899
Alignment:
Q  16 agatgtgtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcccgcaataagggaccatctattaccaataagtgaatgcattctga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48892483 agatgtgtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcccgcaataagggaccatctattaccaataagtgaatgcattctga 48892582  T
Q  116 taataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48892583 taataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaag 48892682  T
Q  216 ccctgcatcaaccaccaacccattttttcacgtaaggttgctaagtctt--acaggagataaattaaggatctaggttcaaacattagtgacacagaaaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    ||||| |||||||||||||||||||||||||||||    
T  48892683 ccctgcatcaaccaccaacccattttttcacgtaaggttgctaagtcttacacaggagata----aaggaactaggttcaaacattagtgacacagaaaa 48892778  T
Q  314 tatcaaccaactactactagtatatatactaatatttgttttgtccaaaaaatgtgatgtaggatacgacacaaacacaccgacaccaataataaattga 413  Q
    ||||||| ||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48892779 tatcaacaaactactactag----tatactaatatttgttttgtccaaaaaatgtgatgtaggatacgacacaaacacactgacaccaataataaattga 48892874  T
Q  414 gaaaacgacgttattcagtataatc 438  Q
    ||||||||||| |||||||||||||    
T  48892875 gaaaacgacgtaattcagtataatc 48892899  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 33928490 - 33928527
Alignment:
Q  16 agatgtgtgttccagtaattctttatctcattatctgt 53  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  33928490 agatgtgtgttccaataattctttatatcattatctgt 33928527  T

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Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 9622136 - 9621926
Alignment:
Q  16 agatgtgtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcccgcaataagggaccatctattaccaataagtgaatgcattctga 115  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| || ||||| ||||||||||| |||| ||||||||| | ||| |    
T  9622136 agatgtgtgttccagtagttctttatttcattgtctgttcgtcctggtaatcttccggctataagtgaccatctatttccaagaagtgaatgtaatctta 9622037  T
Q  116 taataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaag 215  Q
    | || ||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  9622036 ttatgagatcatcttcttcttgagttatgttacctctctttatatctggtctaagataattcatccatctaagtctacaacttttcccacatctaagaag 9621937  T
Q  216 ccctgcatcaa 226  Q
     ||||||||||    
T  9621936 tcctgcatcaa 9621926  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 5843121 - 5843176
Alignment:
Q  154 tttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    |||| ||| ||||||||||| || |||||||||| ||| |||||||||||||||||    
T  5843121 tttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatct 5843176  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 5849872 - 5849918
Alignment:
Q  163 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    ||||||||||| || |||||||||| ||| |||||||||||||||||    
T  5849872 ggtcttagataatttatccatcttaatctacaactttttccacatct 5849918  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 5921241 - 5921287
Alignment:
Q  163 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  5921241 ggtcttagataatttatccatcttaatctgcaactctttccacatct 5921287  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 5984661 - 5984707
Alignment:
Q  163 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  5984661 ggtcttagataatttatccatcttaatctgcaactctttccacatct 5984707  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 7195423 - 7195365
Alignment:
Q  148 cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca 206  Q
    |||||||||||| ||||| | ||||| |||| ||||||| |||| ||||||||||||||    
T  7195423 cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca 7195365  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 52071704 - 52071795
Alignment:
Q  118 ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    |||||||| ||||| ||||  | |||||| |||||||| ||||||||||||||||| |||| |||||| ||||| |||||||||||||||||    
T  52071704 ataagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatct 52071795  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 27808608 - 27808559
Alignment:
Q  22 gtgttccagtaattctttatctcattatctgtacgtcctggtaatcttcc 71  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  27808608 gtgttccaataattctttatctcattatctgttcttcctggtaatcttcc 27808559  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 50200928 - 50201001
Alignment:
Q  136 ggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    ||||||||||| |||||||| | ||||| |||||  ||||| |||||||| ||||||||||| |||||||||||    
T  50200928 ggagttatgttacctctcttcacatctgatcttaagtagtttatccatctgagtctgcaactctttccacatct 50201001  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 50200020 - 50200061
Alignment:
Q  24 gttccagtaattctttatctcattatctgtacgtcctggtaa 65  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  50200020 gttccaataattttttatctcattatctgtacgtcctggtaa 50200061  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 30007308 - 30007246
Alignment:
Q  147 tcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    |||||| || ||||| ||||||| ||||||  |||| ||||||||||||||||| ||||||||    
T  30007308 tcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatct 30007246  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 31939672 - 31939598
Alignment:
Q  145 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaagccct 219  Q
    |||||||| ||||| |||||||  || |||||  |||||||||||||||| || |||||||||||  ||||||||    
T  31939672 tttcctctttttatgtctggtcggaggtagttagtccatcttagtctgcagctctttccacatcttggaagccct 31939598  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 31999970 - 31999896
Alignment:
Q  145 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaagccct 219  Q
    |||||||| ||||| |||||||  || |||||  |||||||||||||||| || |||||||||||  ||||||||    
T  31999970 tttcctctttttatgtctggtcgaaggtagttagtccatcttagtctgcagctctttccacatctttgaagccct 31999896  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 44674794 - 44674748
Alignment:
Q  22 gtgttccagtaattctttatctcattatctgtacgtcctggtaatct 68  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  44674794 gtgttccagtaattcttgatctcattatctgttcttcctggtaatct 44674748  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 33695898 - 33695859
Alignment:
Q  14 tcagatgtgtgttccagtaattctttatctcattatctgt 53  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  33695898 tcagatgagtgttccagaaattctttatctcattatctgt 33695859  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 44674130 - 44674039
Alignment:
Q  118 ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    |||||||||||||||| |  ||| | |||||||||||| | ||| |||||||| || || |||||||| | ||||||||| || ||||||||    
T  44674130 ataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 3911903 - 3911866
Alignment:
Q  16 agatgtgtgttccagtaattctttatctcattatctgt 53  Q
    |||||||||||||| |||||||||||||||||||||||    
T  3911903 agatgtgtgttccaataattctttatctcattatctgt 3911866  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 3910714 - 3910640
Alignment:
Q  145 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaagccct 219  Q
    ||||||||||| |||||||| || ||||||||  ||||||||| |||||| || || ||||||||  ||||||||    
T  3910714 tttcctctcttaatatctggcctaagatagttagtccatcttaatctgcagctcttaccacatctttgaagccct 3910640  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 33732203 - 33732264
Alignment:
Q  145 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca 206  Q
    ||||||||||| ||||||||||| | |||||| ||||| || |||||||| |||||||||||    
T  33732203 tttcctctcttaatatctggtctcaaatagttaatccacctaagtctgcagctttttccaca 33732264  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 16138907 - 16138971
Alignment:
Q  145 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    ||||||||||| ||||| ||| ||| |||||| |||||||| | ||| ||||| |||||||||||    
T  16138907 tttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatct 16138971  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 45605862 - 45605918
Alignment:
Q  148 cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttcca 204  Q
    ||||||||||   |||| ||||||||||| ||||| ||||||||||| |||||||||    
T  45605862 cctctctttaatcctggccttagatagttaatccaccttagtctgcagctttttcca 45605918  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 13343052 - 13342987
Alignment:
Q  141 tatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca 206  Q
    ||||||||||||||| | ||||| ||| | |||||| |||||||||||||| ||||| || |||||    
T  13343052 tatgtttcctctcttcacatctgctctcaaatagttgatccatcttagtctacaactcttcccaca 13342987  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 13344938 - 13344897
Alignment:
Q  24 gttccagtaattctttatctcattatctgtacgtcctggtaa 65  Q
    |||||| || |||||||||||||||||||| |||||||||||    
T  13344938 gttccaatagttctttatctcattatctgttcgtcctggtaa 13344897  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 27172787 - 27172848
Alignment:
Q  148 cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 209  Q
    ||||| |||| ||||||||| | ||||||  ||||||||| ||||||||| |||||||||||    
T  27172787 cctctttttagatctggtctcaaatagtttgtccatcttaatctgcaactctttccacatct 27172848  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 1318462 - 1318506
Alignment:
Q  18 atgtgtgttccagtaattctttatctcattatctgtacgtcctgg 62  Q
    ||||||||||||  |||||||||||||||||||||| | ||||||    
T  1318462 atgtgtgttccaaaaattctttatctcattatctgtccttcctgg 1318506  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 5113925 - 5113881
Alignment:
Q  22 gtgttccagtaattctttatctcattatctgtacgtcctggtaat 66  Q
    ||||||||||| |||||||| |||||||| || ||||||||||||    
T  5113925 gtgttccagtagttctttatatcattatccgttcgtcctggtaat 5113881  T

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