View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_17 (Length: 427)
Name: NF17318_high_17
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 8466349 - 8465951
Alignment:
| Q |
9 |
gattattcttgtgcatgtactaatagaagatggaaaatttaacatgaaaccagtgaaacaaggtaatcgtttacgtttaaaatgataacatattgaattt |
108 |
Q |
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| T |
8466349 |
gattattcttgtgcatgtactaatagaagatggaaaatttaacatgaaaccggtgaaacaaggtaatcgattaggtttaaaatgataacatattgaattt |
8466250 |
T |
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| Q |
109 |
tctctttattttgtttgtagtttagtgtggtatctccatcatgttgacagagaagtcgaaggataattgttttgttcgttttaccggnnnnnnnnnnntt |
208 |
Q |
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| T |
8466249 |
tctctttattttgtttgtagtttagtgtggtatctccatcatgttgacagagaagtcgaaggataattgttttgttcgttttaccggaaaaaaatta-tt |
8466151 |
T |
|
| Q |
209 |
cagcatgggagtttcaattcaagaggtttgttaaagggaaaggcttgtgaggtcatgtagatggcacctcctctgcgcctgctgcagatgctgcaatgat |
308 |
Q |
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| T |
8466150 |
cagcatgggagtttcaattcaagaggtttgttaaagggaaaggcttgtgaggtcatgtagatggcacctcctctgcgcccgctgcagatgctgctatgat |
8466051 |
T |
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| Q |
309 |
ggcagcttagcagacaaagtacgctcagattataacttggattctagcttctattgatcgtcaaatgattaataatccaaattccttttctattgctaag |
408 |
Q |
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| T |
8466050 |
ggcagcttagcagacaaagtacgctcagattataacttggattctagcttctattgatagtcaaatgattaataatccaaattccttttctattgctaag |
8465951 |
T |
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