View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_high_2 (Length: 724)

Name: NF17318_high_2
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_high_2
NF17318_high_2
[»] chr4 (13 HSPs)
chr4 (175-711)||(4598789-4599328)
chr4 (456-593)||(4623500-4623637)
chr4 (185-330)||(4623302-4623447)
chr4 (1-104)||(4598582-4598685)
chr4 (1-92)||(4623098-4623189)
chr4 (196-306)||(25016030-25016140)
chr4 (196-306)||(25037313-25037423)
chr4 (5-93)||(25015819-25015907)
chr4 (1-93)||(25037095-25037187)
chr4 (468-566)||(25016383-25016481)
chr4 (471-566)||(25037649-25037744)
chr4 (640-706)||(4623649-4623715)
chr4 (212-253)||(25002270-25002311)
[»] chr2 (4 HSPs)
chr2 (185-330)||(18805556-18805701)
chr2 (461-593)||(18805349-18805481)
chr2 (1-92)||(18805805-18805896)
chr2 (650-707)||(18805226-18805283)
[»] chr5 (1 HSPs)
chr5 (1-79)||(30363051-30363129)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 175 - 711
Target Start/End: Original strand, 4598789 - 4599328
Alignment:
Q  175 tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtga 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  4598789 tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctcttcgagtga 4598888  T
Q  275 cagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttcnnnnnnnnnnn---ttattagacaattgatttgattaggaaaga 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||    
T  4598889 cagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttcaaaaaaaaataaaattattagacaattgatttgattaggaaaga 4598988  T
Q  372 accaaaaaatattaaatggttgatatacagactatattatcttgcattctatgttagaagtnnnnnnnnnnnnnnnnnnnnngtatgtaatataaatatt 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     | ||||||||||||||||    
T  4598989 accaaaaaatattaaatggttgatatacagactatattatcttgcattctatgttagaagtaaataaaaagaaaatttaaaagaatgtaatataaatatt 4599088  T
Q  472 accattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaagttgca 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4599089 accattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaagttgca 4599188  T
Q  572 gcctgcacatattgtttagttaagaatactggtacaacttaatttgcgagtacaccatagaagtttccatcaaataatatataacaataattacaagaga 671  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  4599189 gcctgcacatattgtttagttaagagtactggtacaacttaatttgcgagtacatcatagaagtttccatcaaataatatataacaataattgcaagaga 4599288  T
Q  672 gtcttactcacccttggtccaacgggtgtcccatcatgat 711  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  4599289 gtcttactcacccttggtccaacgggcgtcccatcatgat 4599328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 456 - 593
Target Start/End: Original strand, 4623500 - 4623637
Alignment:
Q  456 atgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaac 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4623500 atgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaataccctttggacaaac 4623599  T
Q  556 atataaccaagttgcagcctgcacatattgtttagtta 593  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4623600 atataaccaagttgcagcctgcacatattgtttagtta 4623637  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 185 - 330
Target Start/End: Original strand, 4623302 - 4623447
Alignment:
Q  185 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa 284  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |    
T  4623302 agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga 4623401  T
Q  285 tcattgtcctcgttcatacctatgatttaaatttattagaattttc 330  Q
    |||||| | || ||||||||||||||||||||||||||||||||||    
T  4623402 tcattgacttcattcatacctatgatttaaatttattagaattttc 4623447  T

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Target: chr4; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4598582 - 4598685
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacaccactcctac 100  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  4598582 acaaagttaattccaaaacgcacggtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcacattcacaccacgcctac 4598681  T
Q  101 acac 104  Q
    ||||    
T  4598682 acac 4598685  T

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Target: chr4; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 4623098 - 4623189
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacacc 92  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4623098 acaaagttaattccaaaacgcacagtgtatccgtcattccattcaaagttgtccaaaagggaccatgcaaaatatccttgtaccttcacacc 4623189  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
Q  196 tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc 295  Q
    |||||||||| ||||||||||| ||||| |||||| ||||||||||||||| ||||||||| || || ||||| ||||| || |||| |||||||  |||    
T  25016030 tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc 25016129  T
Q  296 gttcataccta 306  Q
    || ||||||||    
T  25016130 gtccataccta 25016140  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
Q  196 tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc 295  Q
    |||||||||| |||| |||||| ||||| |||||| ||||||| ||||||| |||||||||||| |||||||| ||||| ||||||| ||||||   |||    
T  25037313 tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc 25037412  T
Q  296 gttcataccta 306  Q
    || ||||||||    
T  25037413 gtccataccta 25037423  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 25015819 - 25015907
Alignment:
Q  5 agttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacacca 93  Q
    |||| ||||||||||||  |||||||||  |   ||||||||||||||||||||| |||||||||||||||||||| || |||||||||    
T  25015819 agttcattccaaaacgtctagtgtatccagccagccattcaaagttgtccaaaagtgaccatgcaaaatatccttgtactttcacacca 25015907  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 25037095 - 25037187
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacacca 93  Q
    |||||||||||||||||||||    |||||||| |   ||||||||||||||| ||||| |||||||||||||||||||| || |||||||||    
T  25037095 acaaagttaattccaaaacgtcttctgtatccggccagccattcaaagttgtctaaaagtgaccatgcaaaatatccttgtactttcacacca 25037187  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 25016383 - 25016481
Alignment:
Q  468 tattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaag 566  Q
    ||||||||||||||||||||  ||||   ||||| |||||||||  |||||||| ||||||||| |||||||||||| ||||| ||||| ||| |||||    
T  25016383 tattaccattttctgttatgtaaatcaatggattattatactttgtctttgtgtgcaacagtagttcctgaatcccccttggataaacaaatagccaag 25016481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 566
Target Start/End: Original strand, 25037649 - 25037744
Alignment:
Q  471 taccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaag 566  Q
    |||||||||| ||||||  ||||  ||| ||||||||||||  |||||||||||||||||| || ||||||||| ||||| ||||| ||| |||||    
T  25037649 taccattttcggttatgtaaatcacagggttgttatactttgtctttgtgtacaacagtagttcttgaatcccccttggataaacaaatagccaag 25037744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 706
Target Start/End: Original strand, 4623649 - 4623715
Alignment:
Q  640 atcaaataatatataacaataattacaagagagtcttactcacccttggtccaacgggtgtcccatc 706  Q
    ||||||||| || ||||||||||  |||||||||||||||||||| || ||||| |  |||||||||    
T  4623649 atcaaataagatgtaacaataatctcaagagagtcttactcacccatgctccaatgtatgtcccatc 4623715  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
Q  212 ataatatagatgacgataatagtaatcaattctgttagtatc 253  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  25002311 ataataaagatgacgataaaagtaatcaattctgtcagtatc 25002270  T

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Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 185 - 330
Target Start/End: Complemental strand, 18805701 - 18805556
Alignment:
Q  185 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa 284  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| | | |||||||||| | |||||||||||| || |||| |    
T  18805701 agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga 18805602  T
Q  285 tcattgtcctcgttcatacctatgatttaaatttattagaattttc 330  Q
    |||| || ||| || | ||||||||||||||||||||||| |||||    
T  18805601 tcatcgtactcatttaaacctatgatttaaatttattagagttttc 18805556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 461 - 593
Target Start/End: Complemental strand, 18805481 - 18805349
Alignment:
Q  461 atataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatata 560  Q
    |||||| ||||||||||||||||||||  |||   ||||||||||||||||| |||| ||||||||||||| || ||||||||||||||| |||||||||    
T  18805481 atataagtattaccattttctgttatgtaaataacaggattgttatactttttctttatgtacaacagtagctcttgaatcccctttggataaacatata 18805382  T
Q  561 accaagttgcagcctgcacatattgtttagtta 593  Q
     |||| || ||  ||| ||||||| ||||||||    
T  18805381 gccaacttccaaactgtacatattatttagtta 18805349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 18805896 - 18805805
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacacc 92  Q
    ||||||||||||||||||||||  |||||||||||   ||||||||| ||||| |||||||||||||||||||||||||| || ||||||||    
T  18805896 acaaagttaattccaaaacgtaaggtgtatccgtcttgccattcaaaattgtcgaaaagggaccatgcaaaatatccttgtacattcacacc 18805805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 707
Target Start/End: Complemental strand, 18805283 - 18805226
Alignment:
Q  650 atataacaataattacaagagagtcttactcacccttggtccaacgggtgtcccatca 707  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||  ||||| ||||||    
T  18805283 atataacaataattgcaagagacttttactcacctttggtccaattggtgttccatca 18805226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30363129 - 30363051
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatcctt 79  Q
    |||||||| |||||||| |  || ||||| || |||| ||||||||| |||||||| || ||||| |||||||||||||    
T  30363129 acaaagttcattccaaacctcactgtgtacccttcaccccattcaaaattgtccaatagcgaccacgcaaaatatcctt 30363051  T

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