View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_20 (Length: 391)
Name: NF17318_high_20
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 214 - 375
Target Start/End: Original strand, 37552325 - 37552486
Alignment:
| Q |
214 |
tattgaccttcaacgtggggttgaccatgagagaaggttccaaaaagcaagtccttatccaagacaatgaaagtttccttgttgagatcacgtgaccatg |
313 |
Q |
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| T |
37552325 |
tattgaccttcaacgtggggttgaccatgagagaaggttccaaaaagcaagtccttatccaagacaatgaaagtttccttgttgagatcacgtgaccatg |
37552424 |
T |
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| Q |
314 |
agagttgcatctgatactcttgttcgagagaaaggggttcggaagcagtggcttgaagaaga |
375 |
Q |
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| T |
37552425 |
agagttgcatctgatactcttgttcgagagaaaggggttcggaagcagtggcttgaagaaga |
37552486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 37552121 - 37552257
Alignment:
| Q |
10 |
agatgaatttataagtaggtacctggtttgttcagctatcataatttcaacctctgctatttgaggattattgatgtcattcatgaaaatatttacatca |
109 |
Q |
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| T |
37552121 |
agatgaatttataagtaggtacctggtttgttcagctatcataatttcaacctctgctatttgaggattattgatgtcattcatgaaaatatttacatca |
37552220 |
T |
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| Q |
110 |
ccaaccatagctgcaaatagcggcacattgttactac |
146 |
Q |
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| T |
37552221 |
ccaaccatagctgcaaatagcgtcacattgttactac |
37552257 |
T |
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