View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_27 (Length: 366)
Name: NF17318_high_27
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 23915851 - 23916184
Alignment:
| Q |
19 |
agatgggtgctatttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctcta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915851 |
agatgggtgctatttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctcta |
23915950 |
T |
|
| Q |
119 |
aattctaatcgtgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915951 |
aattctaatcgtgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatga |
23916050 |
T |
|
| Q |
219 |
ttctaataaaagttgtgatactttaattttcaagctccctctaattgttccttc-nnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
23916051 |
ttctaataaaagttgtgatactttaattttcaagctccctctaattgttccttcaaaaaaaaaaaatgctccctctaattgtgaatgcgtgtatggactt |
23916150 |
T |
|
| Q |
318 |
tttagaccaagtaagcaagcaccatagacctatg |
351 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
23916151 |
tttagaccaagtaagcaagcaccatagacctatg |
23916184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 18989671 - 18989337
Alignment:
| Q |
19 |
agatgggtgctatttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctcta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18989671 |
agatgggtgctatttcataattattaagaatggattgttgtttatgcttgatttctccttctgttccttatatatcacaattgtattagtttggtctcta |
18989572 |
T |
|
| Q |
119 |
aattctaatcgtgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatga |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989571 |
aattctaatcgtgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatga |
18989472 |
T |
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| Q |
219 |
ttctaataaaagttgtgatactttaattttcaagctccctctaattgttccttc--nnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggact |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
18989471 |
ttctaataaaagttttgatactttaattttcaagctccctctaattgttccttcaaaaaaaaaaaaaagctccctctaattgtgaatgcgtgtatggact |
18989372 |
T |
|
| Q |
317 |
ttttagaccaagtaagcaagcaccatagacctatg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
18989371 |
ttttagaccaagtaagcaagcaccatagacctatg |
18989337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 351
Target Start/End: Original strand, 30340059 - 30340383
Alignment:
| Q |
30 |
atttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctctaaattctaatcg |
129 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
30340059 |
atttcaaaattattaagaatggattgttgtttatgcttgattgctccttttgttccttatagatcacaattgtattagtttggtctctaaattctaattg |
30340158 |
T |
|
| Q |
130 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgattctaataaaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
30340159 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttcgaatcggttgaaatgcgcttccaaattcctctttgattcatgattctaatcaaa |
30340258 |
T |
|
| Q |
230 |
gttgtgatactttaattttcaagctccctctaattgttccttc---nnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactttttagacca |
326 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30340259 |
attgtgatactttaattttcatgctccctctaattgttccttcaaaaaaaaaaaaaatgctccctctaattgtgaatgcgtgtatggactttttagacca |
30340358 |
T |
|
| Q |
327 |
agtaagcaagcaccatagacctatg |
351 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
30340359 |
agtaagcaagcaccatagacctatg |
30340383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 54435010 - 54434868
Alignment:
| Q |
34 |
cataattattaagaatggattgttgtttatgctt-gatttctccttttgttccttatatatcacaattgtattagtttggtctctaaattctaa----tc |
128 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54435010 |
cataattattaagaatggatttttgtttatgttttgattgtaccttttgttccttatatatcacaattgtattagtttggtctctaaattctaattattt |
54434911 |
T |
|
| Q |
129 |
gtgagagttgagtccctgttttgatctcctggtagtgttattt |
171 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||||||| |
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| T |
54434910 |
atgagagttgagtccctattttgatctcctggtactgttattt |
54434868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 54434869 - 54434804
Alignment:
| Q |
201 |
ttcctctttgattcatgattctaataaaagttgtgatactttaattttcaagctccctctaattgtt |
267 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |
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| T |
54434869 |
ttcctctttgattcatgattctaatcaa-gttgtgatactttaattttcatgctccctctaattgtt |
54434804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 54434820 - 54434751
Alignment:
| Q |
284 |
tgctccctctaattgtgaatgtgtgtat--ggactttttagaccaagtaagcaagcaccatagacctatg |
351 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
54434820 |
tgctccctctaattgttgatgcgtgtatatggactttttagaccaagtaagcaagcaccttagacctatg |
54434751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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