View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_28 (Length: 350)
Name: NF17318_high_28
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 6235607 - 6235414
Alignment:
| Q |
19 |
catctgtattgagatttaatggatcatcatgtgctattctgctacctaactattaataatttgatatgcaactcaaattggtgtaaatcctagccagtga |
118 |
Q |
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| T |
6235607 |
catctgtattgagatttaatggatcatcatgtgctattctgctacctaactattaataatttgatatgcaactcaaattggtgtaaatcctagccagtga |
6235508 |
T |
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| Q |
119 |
acataannnnnnnctaactgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatatttaaagcataatca |
213 |
Q |
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| T |
6235507 |
acataattttttt-taaccgttgatatcaaaaagaaatttatatgaaaatgagtatgttttatgattgagtacatttatatttaaagcataatca |
6235414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 6235330 - 6235292
Alignment:
| Q |
302 |
tatatctgattattgatgtatttgatcatgttccttcat |
340 |
Q |
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| T |
6235330 |
tatatctaattattgatgtatttgatcatgttccttcat |
6235292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 2973215 - 2973296
Alignment:
| Q |
132 |
ctaactgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatatttaaagcataatca |
213 |
Q |
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| T |
2973215 |
ctaactgttgatatcaaaaagaaatttatatgaaaatgagtatgttttatgattgaggacatttatatttaaagcataatca |
2973296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 2975469 - 2975539
Alignment:
| Q |
137 |
tgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatatttaaagcataatca |
213 |
Q |
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| T |
2975469 |
tgttgatatcaaaaagaaat------ggaaatgagtatgttttatgattgaggacatttatatttaaagcataatca |
2975539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 2975638 - 2975677
Alignment:
| Q |
301 |
atatatctgattattgatgtatttgatcatgttccttcat |
340 |
Q |
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| T |
2975638 |
atatatctgaatattgatgtatttgatcatgttccttcat |
2975677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 340
Target Start/End: Original strand, 2973404 - 2973432
Alignment:
| Q |
312 |
tattgatgtatttgatcatgttccttcat |
340 |
Q |
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| T |
2973404 |
tattgatgtatttgatcatgttccttcat |
2973432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 201
Target Start/End: Complemental strand, 6026831 - 6026670
Alignment:
| Q |
40 |
gatcatcatgtgctattctgctacctaacta----ttaataatttgatatgcaactcaaattggtgtaaatcctagccagtgaacataannnnnnnctaa |
135 |
Q |
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| T |
6026831 |
gatcaccatgtgctattctactacctaactaactattaataatctgataggcaattcaaactggtgtgaatccta-catgtgaaaataacaaatatctaa |
6026733 |
T |
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| Q |
136 |
ctgttgatatcaaaaagaaatttatatggaaatgtgtatgttttatgattgagtacatttatattt |
201 |
Q |
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|||||||| ||||||||||||||||||||||| ||| | ||| ||||||||||| ||||||| |
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| T |
6026732 |
ttgttgataataaaaagaaatttatatggaaatgagtacgcttt---attgagtacatatatattt |
6026670 |
T |
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