View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_29 (Length: 343)
Name: NF17318_high_29
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 43023275 - 43022962
Alignment:
| Q |
19 |
agaaggctatgtatgtcatagatgcaaggtgtctggtatgctcatatttctcaacttcataacccgttctgtttatagaatgctggttacctgtgtcagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43023275 |
agaaggctatgtatgtcatagatgcaaggtgtctggtatgctcatatttctcaacttcataacccgttctgtttatagaatgctggttacctgtgtcagt |
43023176 |
T |
|
| Q |
119 |
taatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaacttttgacatcaaaaaactcaggc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43023175 |
taatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaacttttgacatcaaaaaactcaggc |
43023076 |
T |
|
| Q |
219 |
aacctactggtattcctagatccatgctgatggtaaatccacaaggttcctatgctctacaaaatggttcagtagctgttttgaagccaaatgagtgagt |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43023075 |
aacctactggtattcctagatccatgctgatggtaaatccacaaggttcctatgctctacaaaatggttcagtagctgttttgaagccaaatgagtgagt |
43022976 |
T |
|
| Q |
319 |
acatcttgattctt |
332 |
Q |
| |
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|||||||||||||| |
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| T |
43022975 |
acatcttgattctt |
43022962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 35061946 - 35061633
Alignment:
| Q |
19 |
agaaggctatgtatgtcatagatgcaaggtgtctggtatgctcatatttctcaacttcataacccgttctgtttatagaatgctggttacctgtgtcagt |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35061946 |
agaaggctatgtatgtcacagatgcaaggtgtctggtatgctcatatttctcaactttataacccgttttgtttatagaatgctggttacctgtgtcagt |
35061847 |
T |
|
| Q |
119 |
taatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaacttttgacatcaaaaaactcaggc |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061846 |
taatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaacttttgacatcaaaaaactcaggc |
35061747 |
T |
|
| Q |
219 |
aacctactggtattcctagatccatgctgatggtaaatccacaaggttcctatgctctacaaaatggttcagtagctgttttgaagccaaatgagtgagt |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061746 |
aacctactggtattcctagatctatgctgatggtaaatccacaaggttcctatgctctacaaaatggttcagtagctgttttgaagccaaatgagtgagt |
35061647 |
T |
|
| Q |
319 |
acatcttgattctt |
332 |
Q |
| |
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|||||||||||||| |
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|
| T |
35061646 |
acatcttgattctt |
35061633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 42812897 - 42812584
Alignment:
| Q |
19 |
agaaggctatgtatgtcatagatgcaaggtgtctggtatgctcatatttctcaacttcataacccgttctgtttatagaatgctggttacctgtgtcagt |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| | |||||||||||||||||||||| |
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|
| T |
42812897 |
agaaggctatgtatgtcacagatgcaaggtgtctggtatgttcatatttctcaactttataacccattctgtttgcaaaatgctggttacctgtgtcagt |
42812798 |
T |
|
| Q |
119 |
taatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaacttttgacatcaaaaaactcaggc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
42812797 |
taatttggctaacttgtctcttgttacatctgttaaggacatttcattcagcattgccctacaaatggtgattccacttttgacatcaaaaaagtcaggc |
42812698 |
T |
|
| Q |
219 |
aacctactggtattcctagatccatgctgatggtaaatccacaaggttcctatgctctacaaaatggttcagtagctgttttgaagccaaatgagtgagt |
318 |
Q |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42812697 |
agcctactggtattcctagatctatgctgatggtaaatccacaaggttcctatgctctacaaaatggttcagtagctgttttgaagccaaatgagtgagt |
42812598 |
T |
|
| Q |
319 |
acatcttgattctt |
332 |
Q |
| |
|
|||||||||||||| |
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|
| T |
42812597 |
acatcttgattctt |
42812584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 147 - 335
Target Start/End: Original strand, 41564677 - 41564865
Alignment:
| Q |
147 |
tttgttaaggacatttcattcagcattgccctacaaatggtgatgcaacttttgacatcaaaaaactcaggcaacctactggtattcctagatccatgct |
246 |
Q |
| |
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|||||| |||||||||||||||||| ||||| |||||||||||| ||| || |||| |||| | | ||| |||||||||||||||||||||||| ||||| |
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| T |
41564677 |
tttgtttaggacatttcattcagcactgccccacaaatggtgatccaaattatgacgtcaagagagtcaagcaacctactggtattcctagatctatgct |
41564776 |
T |
|
| Q |
247 |
gatggtaaatccacaaggttcctatgctctacaaaatggttcagtagctgttttgaagccaaatgagtgagtacatcttgattcttctc |
335 |
Q |
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|
|||||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41564777 |
gatggtaaatccacaaggttcctatgctttgccaaatggttcggtagctgttttgaagccaaatgagtgagtatatcttgattcttctc |
41564865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 41564554 - 41564591
Alignment:
| Q |
21 |
aaggctatgtatgtcatagatgcaaggtgtctggtatg |
58 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||| |
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| T |
41564554 |
aaggctatgtatgtcacagatgcaaggtgcctggtatg |
41564591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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