View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_3 (Length: 692)
Name: NF17318_high_3
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Complemental strand, 21833231 - 21832797
Alignment:
| Q |
19 |
caatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagagg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
21833231 |
caatgatgggaaacgagagatttgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatcttttgaagagg |
21833132 |
T |
|
| Q |
119 |
ggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggataca |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21833131 |
ggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggataca |
21833032 |
T |
|
| Q |
219 |
agtagcgacgattgttgtcgtcgtcgtcgatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatatgaatgtgttgttgtaaccat |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21833031 |
agtagcgacgattgttgtcgtcctcgtcgatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatttgaatgtgttgttgtaaccat |
21832932 |
T |
|
| Q |
319 |
ggttttgcgaagtcgtgaaaactgtagaaactgtgaacacaaaaagacggtaacgttggtgcaaaaatggtgctggcggtgacacaaaaatattagggtt |
418 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832931 |
ggttttgcgaagtcgtgaaaactgcagaaaccgtgaacacaaaaagacggtaacgttagtgcaaaaatggtgctggcggtgacacaaaaatattagggtt |
21832832 |
T |
|
| Q |
419 |
tggagttaggttatgtttttattgttacgggtttg |
453 |
Q |
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| T |
21832831 |
tggagttaggttatgtttttattgttacgggtttg |
21832797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 459 - 554
Target Start/End: Complemental strand, 21832497 - 21832402
Alignment:
| Q |
459 |
ggtaacggatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
554 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832497 |
ggtaacagatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
21832402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 610 - 672
Target Start/End: Complemental strand, 21832347 - 21832285
Alignment:
| Q |
610 |
acataaaattcaacttcattcaattaggaaatggattatcggcaacacttatttctccacact |
672 |
Q |
| |
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| T |
21832347 |
acataaaattcaacttcattcaattgggaaatggattatcggcaacacttatttctccacact |
21832285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 10615815 - 10616023
Alignment:
| Q |
19 |
caatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagagg |
118 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| | |||||| ||||| |||| || ||||| ||||| |||||| |
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| T |
10615815 |
caatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaagagg |
10615914 |
T |
|
| Q |
119 |
ggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggataca |
218 |
Q |
| |
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| | | || ||||||||||||||||| || ||| ||||| || || | | | | |||||||||||| ||| ||||||||| |||||||| || || |
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| T |
10615915 |
aggcaaaggaaagggcgtgttggattgaagatagtgagtgagaaccggatccggttggtgatggagaggagttgcttggagacaagggagagagaattca |
10616014 |
T |
|
| Q |
219 |
agtagcgac |
227 |
Q |
| |
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||||||||| |
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| T |
10616015 |
agtagcgac |
10616023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 6417194 - 6417399
Alignment:
| Q |
19 |
caatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagagg |
118 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| || ||||| || || ||||| | |||||| ||||| |||| || ||||| ||||| |||||| |
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| T |
6417194 |
caatgatggaaaacgagagattttacggagaagagcatcaaggtcgccatgaaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaagagg |
6417293 |
T |
|
| Q |
119 |
ggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggataca |
218 |
Q |
| |
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||| | || |||||||||||||||||||| |||||||| ||||||| | | | |||||||||||| ||| ||||||||| ||||||| || || |
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| T |
6417294 |
cgacaaaggaaagggcgtgttggattgaggatagtcagtgtgaatcgaattcggttggtgatggagaggagttgcttggagacaagggagagaaaattca |
6417393 |
T |
|
| Q |
219 |
agtagc |
224 |
Q |
| |
|
|||||| |
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|
| T |
6417394 |
agtagc |
6417399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 6433175 - 6433220
Alignment:
| Q |
253 |
gaatttgaagatgcatttccaacagtcatcaggtaagtatgaatat |
298 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||| | ||||||| |
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| T |
6433175 |
gaatctgaagatgcattcccaacagtcatcaggtaaatttgaatat |
6433220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 45055858 - 45055773
Alignment:
| Q |
177 |
tgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtcgtcgtcgatgatgaatttgaag |
262 |
Q |
| |
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||||||||||||| ||||||||||| |||||||| | |||||| ||| |||||||| || ||| ||||||| |||||||||| |
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| T |
45055858 |
tgatggagaggaagtgtttggagacgagggagagagactctaagtagggactattgttgttgtagtcatcgatgaggaatttgaag |
45055773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 28532997 - 28533138
Alignment:
| Q |
95 |
agattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtt |
194 |
Q |
| |
|
|||| ||||||||||||||||||| | | | || |||| |||||||||||| || ||| ||||| ||||| || | || ||||||||||||| ||| |
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| T |
28532997 |
agatgggtgaaccttttgaagaggctaagtaggaaagggggtgttggattgacgagagtgagtgagaatcggaggcgtccggtgatggagaggaaccgtt |
28533096 |
T |
|
| Q |
195 |
tggagacagcggagagaggatacaagtagcgacgattgttgt |
236 |
Q |
| |
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|||| || | |||||||| | ||||| |||||| ||||||| |
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| T |
28533097 |
tggatacggtggagagagaactcaagttgcgacggttgttgt |
28533138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 13469603 - 13469463
Alignment:
| Q |
19 |
caatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagagg |
118 |
Q |
| |
|
|||||||| ||| |||||||||| |||||||| ||| ||||| || |||||||| | |||||| || || |||| || ||||| ||||| |||||| |
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| T |
13469603 |
caatgatgagaagcgagagattttgcggagaagagcgtcaaggtccccatggaagcgtgtgaggttgagtgaattaaggtttgtgaatcttttaaagagg |
13469504 |
T |
|
| Q |
119 |
ggacggatgagagggcgtgttggattgaggacagtcagtga |
159 |
Q |
| |
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||| | || |||| ||||||||||||||| ||| ||||| |
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| T |
13469503 |
cgacaaaggaaagggtgtgttggattgaggatagtgagtga |
13469463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 30827961 - 30828001
Alignment:
| Q |
77 |
gagaggttaagggaggtaagattggtgaaccttttgaagag |
117 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
30827961 |
gagaggtcgagggaggtgagattggtgaaccttttgaagag |
30828001 |
T |
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