View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_33 (Length: 314)
Name: NF17318_high_33
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 20693617 - 20693896
Alignment:
| Q |
18 |
agtttccactattcaaagctccattcctctctgattcaatcaacaacataacttcattctgtaaactccctaaacacagtttcttcctcatcaagccacc |
117 |
Q |
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| T |
20693617 |
agtttccactattcaaagctccattcctgtctgattcaatcaacaatataacttcattctgcaaactccctaaacacagtttcttcctcatcaagccacc |
20693716 |
T |
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| Q |
118 |
actnnnnnnnnnnnnnnnnnnnnncctagttcaaccttggttggttagaattactcaaacttcaagtggcaaaaacaaactcatacacccattcctctca |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20693717 |
actagaacagcaacaacaaac---cctagttcaaccttggttggttagaattactcaaacttcaagtggcaaaaacaaactcatacacccattcctctca |
20693813 |
T |
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| Q |
218 |
catcaatatcaatcaccttatccttttcattttcctcacgctctcgacttcagcgaactctcggtttgccatttagttacctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20693814 |
catcaatatcaatcaccttatccttttcattttcctcacgctctcgacttcagcaaactctcggtttgccatttagttacctt |
20693896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 250741 - 250811
Alignment:
| Q |
49 |
tgattcaatcaacaacataacttcattctgtaaactccctaaacacagtttcttcctcatcaagccaccac |
119 |
Q |
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|||||| ||||||||||| || |||| |||| ||| |||||||| |||||||||||||||| ||||||| |
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| T |
250741 |
tgattccatcaacaacatctctgaattccgtaacctctctaaacacggtttcttcctcatcaaaccaccac |
250811 |
T |
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