View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_41 (Length: 287)
Name: NF17318_high_41
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 28 - 274
Target Start/End: Original strand, 36227033 - 36227281
Alignment:
| Q |
28 |
attaaatctataaattataaatgttgattgcgttacttcatattttcatttatatctagcttgagggtttagaaaggatcatgaagtttcgaattttcgt |
127 |
Q |
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| T |
36227033 |
attaaacctatgaactataaatgttgattgcgttacttcatattttcatttatatctagcttgagggtttagaaaggatcatgaagtttcgaattttcgc |
36227132 |
T |
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| Q |
128 |
agtta--gtttatatattattnnnnnnnnnctagttaggtacgaatttaatctgtttaaaaatgtgggtaactaatccatagatatgtattgtaaaatat |
225 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36227133 |
agttatagtttatatattattaaaaaaaaactagttaggtacgaatttaatctgtttaaaaatgtgggtaactcatccatagatatgtattgtaaaatat |
36227232 |
T |
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| Q |
226 |
gcatagtcgattaaaatagttataaaattctatggtatgtggttcatat |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36227233 |
gcatagtcgattaaaatagttataaaattctatggtatgtggttcatat |
36227281 |
T |
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