View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_high_43 (Length: 271)

Name: NF17318_high_43
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_high_43
NF17318_high_43
[»] chr4 (1 HSPs)
chr4 (13-252)||(13129774-13130013)
[»] chr2 (1 HSPs)
chr2 (109-228)||(25534138-25534257)
[»] chr5 (2 HSPs)
chr5 (139-244)||(15375312-15375416)
chr5 (115-163)||(35667174-35667222)
[»] chr6 (2 HSPs)
chr6 (34-223)||(17884439-17884629)
chr6 (103-244)||(28586937-28587078)
[»] chr8 (2 HSPs)
chr8 (105-204)||(19785743-19785842)
chr8 (124-233)||(16400997-16401106)
[»] chr7 (1 HSPs)
chr7 (13-204)||(20581374-20581569)
[»] chr1 (1 HSPs)
chr1 (124-223)||(18829358-18829457)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 13129774 - 13130013
Alignment:
Q  13 tgaaggattgaataaaatactcatctatgcaaattttatgaatgagctcctgtcaaggaagaaagggttaccaaaggaaaaatcgatagtactaaccaga 112  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13129774 tgaagcattgaataaaatactcatctacgcaaattttatgaatgagctcctatcaaggaagaaagggttaccaaagaaaaaatcgataatactaaccaga 13129873  T
Q  113 agttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13129874 agttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacctagaaagtctcaactctattgggaagctgcccataaaagaagctcgatatg 13129973  T
Q  213 gtcttggtgaaagcattaactctaccccatcactgttgat 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13129974 gtcttggtgaaagcattaactctaccccatcactgttgat 13130013  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 25534257 - 25534138
Alignment:
Q  109 cagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcgg 208  Q
    |||||||||||| | | ||||||||||||||||||||| ||||||| | | ||| | |||| |||| ||||||||||||||| || ||||||||||||||    
T  25534257 cagaagttgtaaggcactatttcaaggacggttacctctaaagaagaagggccctggaagtttcaattctattgggaagctgtccgtaaaagaagctcgg 25534158  T
Q  209 tatggtcttggtgaaagcat 228  Q
    |  ||||| |||||| ||||    
T  25534157 tggggtctgggtgaaggcat 25534138  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 15375312 - 15375416
Alignment:
Q  139 gttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatggtcttggtgaaagcattaactctacc 238  Q
    |||||||| ||||||| | |||||| ||||  |||| | ||| ||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  15375312 gttacctctaaagaagaaggaccca-aaagcttcaattatatcgggaagctatccataaaagaagctcgatatggtcttggagaaagcattaactctacc 15375410  T
Q  239 ccatca 244  Q
    ||||||    
T  15375411 ccatca 15375416  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 35667174 - 35667222
Alignment:
Q  115 ttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgaccca 163  Q
    |||||||||||||||| ||||||||| ||||| ||||||| | ||||||    
T  35667174 ttgtaatgaaatattttaaggacggtcacctccaaagaagaaggaccca 35667222  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 17884439 - 17884629
Alignment:
Q  34 catctatgcaaattttatgaatgagctcctgtcaaggaagaaagggttaccaaaggaaaaatcgatagtactaaccagaagttgtaatg-aaatatttca 132  Q
    |||||| ||||| |||||||| ||| || |||||| |||||| | ||||||||||| |||||    |||||||||| | || | ||  | ||||||||||    
T  17884439 catctacgcaaaatttatgaaagaggtcttgtcaaagaagaaggagttaccaaagggaaaatgagcagtactaaccgggagctttagagcaaatatttca 17884538  T
Q  133 aggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatggtcttggtgaa 223  Q
    || |  |||||||| ||||||| | ||||| | |||| |||| |||||||||||| ||  ||||||||||||||||| |||||| ||||||    
T  17884539 agcatagttacctccaaagaagaaggaccctggaagtttcaattctattgggaagttgttcataaaagaagctcggtgtggtctaggtgaa 17884629  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 244
Target Start/End: Original strand, 28586937 - 28587078
Alignment:
Q  103 actaaccagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaa 202  Q
    |||||||||||  || ||||  ||||||||||||||| |||||||||  ||| | |  |||| |||| |||| |||||||| ||| ||  ||||||||||    
T  28586937 actaaccagaaactgaaatgccatatttcaaggacggctacctcaaactaagaagggtccaggaagtttcaattctattggaaagttgttcataaaagaa 28587036  T
Q  203 gctcggtatggtcttggtgaaagcattaactctaccccatca 244  Q
    |||||||||||| |  |||||  ||||||||||| |||||||    
T  28587037 gctcggtatggtttaagtgaagtcattaactctatcccatca 28587078  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 19785842 - 19785743
Alignment:
Q  105 taaccagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagc 204  Q
    |||| |||| |||||||| ||||| |||||||| |||||||||||||||| |  |||||| |||| |||| |||||||||||| || |||| ||| ||||    
T  19785842 taactagaaattgtaatgcaatatctcaaggacagttacctcaaaagaagaagaacccaggaagtttcaattctattgggaagttgtccattaaaaaagc 19785743  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 16401106 - 16400997
Alignment:
Q  124 aatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatggtcttggtgaa 223  Q
    ||||||||||||||| ||||||| ||||||| | ||||  | |||| |||| ||||||| ||||||| || | ||| ||||||||| |||||| ||||||    
T  16401106 aatatttcaaggacgattacctctaaagaagaaggaccttggaagtttcaattctattgcgaagctgtccgtgaaacaagctcggtgtggtctgggtgaa 16401007  T
Q  224 agcattaact 233  Q
     |||| ||||    
T  16401006 ggcataaact 16400997  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 20581569 - 20581374
Alignment:
Q  13 tgaaggattgaataaaatactcatctatgcaaattttatgaatgagctcctgtcaaggaagaaagggttaccaaaggaaaaatcga----tagtactaac 108  Q
    ||||| ||||||||| || | |||||| ||||| |||||||||||| |||||| | ||||| | ||||| |||||  |||||   |    ||||| ||||    
T  20581569 tgaagcattgaataagatgcccatctacgcaaagtttatgaatgaggtcctgttagggaagcaggggtttccaaaaaaaaaaaaaaattgtagtattaac 20581470  T
Q  109 cagaagttgtaatgaaatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagc 204  Q
    |||||||||||||| ||||| |||| |  |||||||||||| |||| | || |||| ||   |||| |||||||||||| || |||| ||| ||||    
T  20581469 cagaagttgtaatgcaatatctcaatggtggttacctcaaacgaagaaggagccaggaaccttcaattctattgggaagttgtccattaaaaaagc 20581374  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 18829457 - 18829358
Alignment:
Q  124 aatatttcaaggacggttacctcaaaagaagcatgacccagaaagtctcaactctattgggaagctgcccataaaagaagctcggtatggtcttggtgaa 223  Q
    |||||||||||||| | |||||  ||||||| | ||| | | |||| |||| ||||||||||||||| |  | ||||||||||||| |||||| ||||||    
T  18829457 aatatttcaaggacagatacctttaaagaagaaggactctggaagtttcaattctattgggaagctgtctgtgaaagaagctcggtgtggtctaggtgaa 18829358  T

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