View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_high_5 (Length: 575)

Name: NF17318_high_5
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_high_5
NF17318_high_5
[»] chr4 (12 HSPs)
chr4 (175-559)||(4598789-4599176)
chr4 (185-330)||(4623302-4623447)
chr4 (456-559)||(4623500-4623603)
chr4 (1-104)||(4598582-4598685)
chr4 (1-92)||(4623098-4623189)
chr4 (196-306)||(25016030-25016140)
chr4 (196-306)||(25037313-25037423)
chr4 (5-93)||(25015819-25015907)
chr4 (1-93)||(25037095-25037187)
chr4 (468-556)||(25016383-25016471)
chr4 (471-556)||(25037649-25037734)
chr4 (212-253)||(25002270-25002311)
[»] chr2 (3 HSPs)
chr2 (185-330)||(18805556-18805701)
chr2 (1-92)||(18805805-18805896)
chr2 (461-559)||(18805383-18805481)
[»] chr5 (1 HSPs)
chr5 (1-79)||(30363051-30363129)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 175 - 559
Target Start/End: Original strand, 4598789 - 4599176
Alignment:
Q  175 tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtga 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  4598789 tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctcttcgagtga 4598888  T
Q  275 cagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttc---nnnnnnnnnnnttattagacaattgatttgattaggaaaga 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||    
T  4598889 cagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttcaaaaaaaaataaaattattagacaattgatttgattaggaaaga 4598988  T
Q  372 accaaaaaatattaaatggttgatatacagactatattatcttgcattctatgttagaagtnnnnnnnnnnnnnnnnnnnnngtatgtaatataaatatt 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     | ||||||||||||||||    
T  4598989 accaaaaaatattaaatggttgatatacagactatattatcttgcattctatgttagaagtaaataaaaagaaaatttaaaagaatgtaatataaatatt 4599088  T
Q  472 accattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatat 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4599089 accattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatat 4599176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 185 - 330
Target Start/End: Original strand, 4623302 - 4623447
Alignment:
Q  185 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa 284  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |    
T  4623302 agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga 4623401  T
Q  285 tcattgtcctcgttcatacctatgatttaaatttattagaattttc 330  Q
    |||||| | || ||||||||||||||||||||||||||||||||||    
T  4623402 tcattgacttcattcatacctatgatttaaatttattagaattttc 4623447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 456 - 559
Target Start/End: Original strand, 4623500 - 4623603
Alignment:
Q  456 atgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaac 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4623500 atgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaataccctttggacaaac 4623599  T
Q  556 atat 559  Q
    ||||    
T  4623600 atat 4623603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4598582 - 4598685
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacaccactcctac 100  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  4598582 acaaagttaattccaaaacgcacggtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcacattcacaccacgcctac 4598681  T
Q  101 acac 104  Q
    ||||    
T  4598682 acac 4598685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 4623098 - 4623189
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacacc 92  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4623098 acaaagttaattccaaaacgcacagtgtatccgtcattccattcaaagttgtccaaaagggaccatgcaaaatatccttgtaccttcacacc 4623189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
Q  196 tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc 295  Q
    |||||||||| ||||||||||| ||||| |||||| ||||||||||||||| ||||||||| || || ||||| ||||| || |||| |||||||  |||    
T  25016030 tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc 25016129  T
Q  296 gttcataccta 306  Q
    || ||||||||    
T  25016130 gtccataccta 25016140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
Q  196 tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc 295  Q
    |||||||||| |||| |||||| ||||| |||||| ||||||| ||||||| |||||||||||| |||||||| ||||| ||||||| ||||||   |||    
T  25037313 tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc 25037412  T
Q  296 gttcataccta 306  Q
    || ||||||||    
T  25037413 gtccataccta 25037423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 25015819 - 25015907
Alignment:
Q  5 agttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacacca 93  Q
    |||| ||||||||||||  |||||||||  |   ||||||||||||||||||||| |||||||||||||||||||| || |||||||||    
T  25015819 agttcattccaaaacgtctagtgtatccagccagccattcaaagttgtccaaaagtgaccatgcaaaatatccttgtactttcacacca 25015907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 25037095 - 25037187
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacacca 93  Q
    |||||||||||||||||||||    |||||||| |   ||||||||||||||| ||||| |||||||||||||||||||| || |||||||||    
T  25037095 acaaagttaattccaaaacgtcttctgtatccggccagccattcaaagttgtctaaaagtgaccatgcaaaatatccttgtactttcacacca 25037187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 468 - 556
Target Start/End: Original strand, 25016383 - 25016471
Alignment:
Q  468 tattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaaca 556  Q
    ||||||||||||||||||||  ||||   ||||| |||||||||  |||||||| ||||||||| |||||||||||| ||||| |||||    
T  25016383 tattaccattttctgttatgtaaatcaatggattattatactttgtctttgtgtgcaacagtagttcctgaatcccccttggataaaca 25016471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 25037649 - 25037734
Alignment:
Q  471 taccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaaca 556  Q
    |||||||||| ||||||  ||||  ||| ||||||||||||  |||||||||||||||||| || ||||||||| ||||| |||||    
T  25037649 taccattttcggttatgtaaatcacagggttgttatactttgtctttgtgtacaacagtagttcttgaatcccccttggataaaca 25037734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
Q  212 ataatatagatgacgataatagtaatcaattctgttagtatc 253  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  25002311 ataataaagatgacgataaaagtaatcaattctgtcagtatc 25002270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 185 - 330
Target Start/End: Complemental strand, 18805701 - 18805556
Alignment:
Q  185 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa 284  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| | | |||||||||| | |||||||||||| || |||| |    
T  18805701 agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga 18805602  T
Q  285 tcattgtcctcgttcatacctatgatttaaatttattagaattttc 330  Q
    |||| || ||| || | ||||||||||||||||||||||| |||||    
T  18805601 tcatcgtactcatttaaacctatgatttaaatttattagagttttc 18805556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 18805896 - 18805805
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcaccttcacacc 92  Q
    ||||||||||||||||||||||  |||||||||||   ||||||||| ||||| |||||||||||||||||||||||||| || ||||||||    
T  18805896 acaaagttaattccaaaacgtaaggtgtatccgtcttgccattcaaaattgtcgaaaagggaccatgcaaaatatccttgtacattcacacc 18805805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 461 - 559
Target Start/End: Complemental strand, 18805481 - 18805383
Alignment:
Q  461 atataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatat 559  Q
    |||||| ||||||||||||||||||||  |||   ||||||||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||||    
T  18805481 atataagtattaccattttctgttatgtaaataacaggattgttatactttttctttatgtacaacagtagctcttgaatcccctttggataaacatat 18805383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30363129 - 30363051
Alignment:
Q  1 acaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatcctt 79  Q
    |||||||| |||||||| |  || ||||| || |||| ||||||||| |||||||| || ||||| |||||||||||||    
T  30363129 acaaagttcattccaaacctcactgtgtacccttcaccccattcaaaattgtccaatagcgaccacgcaaaatatcctt 30363051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University