View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_52 (Length: 248)
Name: NF17318_high_52
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_52 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 769950 - 769807
Alignment:
| Q |
12 |
tatacttcctacaaatagcttatgtacaaaatatcaatcaaaaaactaaaccaaaatagaatagaaaggttaactaattgtgtaacaaactttgttatta |
111 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
769950 |
tatacttcctacaaatagcctatgtacagaatatcaatcaaaaaactaaaccaaaatagaatagaaaggttaaccaattgtgtaacaaacttcgttatta |
769851 |
T |
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| Q |
112 |
tacttaaaagtggaaatagtcatggattgaattgaatgaaaaaa |
155 |
Q |
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| T |
769850 |
tacttgaaagtggaaatagtcatggattgaattgaacgaaaaaa |
769807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 16396668 - 16396591
Alignment:
| Q |
38 |
caaaatatcaatcaaaaaac---taaaccaaaatagaatagaaaggttaactaattgtgtaacaaactttgttattat |
112 |
Q |
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| T |
16396668 |
caaaatatcaatcaaaaaaaaattaaaccaaaatagaagagaaaggttaaccaattgtgtaaccaactttgttattat |
16396591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 27985994 - 27985928
Alignment:
| Q |
164 |
taaaactaatctttaataagagatatcatcatatgctacagcccataatttatacattatttaaagt |
230 |
Q |
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| T |
27985994 |
taaaactaagctttaataagagatatcatcatatgctttagcccataatttatacattatttcaagt |
27985928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 28072525 - 28072459
Alignment:
| Q |
164 |
taaaactaatctttaataagagatatcatcatatgctacagcccataatttatacattatttaaagt |
230 |
Q |
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| T |
28072525 |
taaaactaagctttaataagagatatcatcatatgctttagcccataatttatacattatttcaagt |
28072459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 22391825 - 22391887
Alignment:
| Q |
51 |
aaaaaactaaaccaaaatagaatagaaaggttaactaattgtgtaacaaactttgttattata |
113 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
22391825 |
aaaaaattaaaccaaaatagaatagaaaggttaaccaattgtgtaaccaactttgttaatata |
22391887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 24747536 - 24747470
Alignment:
| Q |
164 |
taaaactaatctttaataagagatatcatcatatgctacagcccataatttatacattatttaaagt |
230 |
Q |
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||||||||| |||| ||||||||||||||||||||||| ||||||||||| | ||||||||| |||| |
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| T |
24747536 |
taaaactaagctttgataagagatatcatcatatgctatagcccataattcacacattatttcaagt |
24747470 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 26414750 - 26414816
Alignment:
| Q |
164 |
taaaactaatctttaataagagatatcatcatatgctacagcccataatttatacattatttaaagt |
230 |
Q |
| |
|
||||||||| |||||||||||| || ||| |||||||| ||||||||||| | ||||||||| |||| |
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| T |
26414750 |
taaaactaagctttaataagaggtaccataatatgctagagcccataattcacacattatttcaagt |
26414816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 52936210 - 52936161
Alignment:
| Q |
35 |
gtacaaaatatcaatcaaa-aaactaaaccaaaatagaatagaaaggtta |
83 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
52936210 |
gtacaaaatatcaatgaaataaactaaatcaaaatagaatagaaaggtta |
52936161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 52943845 - 52943796
Alignment:
| Q |
35 |
gtacaaaatatcaatcaaa-aaactaaaccaaaatagaatagaaaggtta |
83 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
52943845 |
gtacaaaatatcaatgaaataaactaaatcaaaatagaatagaaaggtta |
52943796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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