View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_high_54 (Length: 244)
Name: NF17318_high_54
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 35688522 - 35688436
Alignment:
| Q |
16 |
tcatcttctttatacaaaggatgtgtcacgttatctaaaacccatttaccattgaacaagtcacactcttttggtggcaactcaacc |
102 |
Q |
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| T |
35688522 |
tcatcttctttatacaaaggatgtgtcacgttatctaaaacccatttaccattgaacaagtcacaatcttttggtggcaactcaacc |
35688436 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 35688364 - 35688307
Alignment:
| Q |
174 |
caccttaacacgttcttgtggctcatcagaatcttcatcatcatcaacattcttctca |
231 |
Q |
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| T |
35688364 |
caccttaacacgttcttgtggctcatcagaatcttcatcatcatcaacactcttctca |
35688307 |
T |
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