View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17318_high_56 (Length: 239)

Name: NF17318_high_56
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17318_high_56
NF17318_high_56
[»] chr2 (1 HSPs)
chr2 (19-239)||(24566882-24567102)
[»] chr5 (1 HSPs)
chr5 (22-115)||(20936099-20936192)
[»] chr1 (1 HSPs)
chr1 (22-115)||(28137869-28137962)
[»] scaffold0207 (1 HSPs)
scaffold0207 (22-115)||(30186-30279)
[»] chr8 (2 HSPs)
chr8 (22-115)||(21286022-21286115)
chr8 (22-115)||(27010663-27010756)
[»] scaffold0264 (1 HSPs)
scaffold0264 (22-115)||(6821-6914)
[»] scaffold0001 (1 HSPs)
scaffold0001 (22-115)||(134779-134872)
[»] chr7 (1 HSPs)
chr7 (22-115)||(18404151-18404244)
[»] chr6 (1 HSPs)
chr6 (22-115)||(27521631-27521724)
[»] chr4 (4 HSPs)
chr4 (22-115)||(15458560-15458653)
chr4 (22-115)||(15819203-15819296)
chr4 (22-115)||(18114189-18114282)
chr4 (22-115)||(18160225-18160318)
[»] chr3 (1 HSPs)
chr3 (22-115)||(12306816-12306909)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 24566882 - 24567102
Alignment:
Q  19 ttaaatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgattata 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24566882 ttaaattcgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatgaactattggaatcctttgattata 24566981  T
Q  119 attcatttgaaacgtcaagctcttgtttgtcgagaaaggtgacaaaaaccataatcacaagaaaaggtaaaaagacaaatgatattttggcactcataca 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  24566982 attcatttgaaacgtcaagctcttgtttgtcgggaaaggtgacaaaaaccatattcacaaggaaaggtaaaaagacaaatgatattttggcactcataca 24567081  T
Q  219 tattgatgtatgtggaccact 239  Q
    |||||||||||||||||||||    
T  24567082 tattgatgtatgtggaccact 24567102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 20936099 - 20936192
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||| || ||||| ||||| ||||||||||||||||| ||||| || |||||||    
T  20936099 aatccaacttacctttggcattgtcgtttaggccatataaatgagaatcgcatttccaaactccataaagatggacttttggattcttttgatt 20936192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 28137962 - 28137869
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||| || ||||| ||||| ||||||||||||||||| ||||| || |||||||    
T  28137962 aatccaacttacctttggcattgtcgtttaggccatataaatgagaatcgcatttccaaactccataaagatggacttttggattcttttgatt 28137869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 30186 - 30279
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||| || ||||| ||||| ||||||||||||||||| ||| | || |||||||    
T  30186 aatccaacttacctttggcattgtcgtttaggccatataaatgagaatcgcatttccaaactccataaagatggacttttgcattcttttgatt 30279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 21286115 - 21286022
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||| || ||||| ||||| || |||||||||||||| ||||| || |||||||    
T  21286115 aatccaacttacctttggcattgtcgtttaggccatataaatgagaatcgcatttccaaacttcataaagatggacttttggattcttttgatt 21286022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 27010756 - 27010663
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  27010756 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 27010663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 6914 - 6821
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  6914 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 6821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 134872 - 134779
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  134872 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 134779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 18404151 - 18404244
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  18404151 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 18404244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 27521724 - 27521631
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  27521724 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 27521631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 15458560 - 15458653
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  15458560 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 15458653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 15819203 - 15819296
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  15819203 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 15819296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 18114282 - 18114189
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  18114282 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 18114189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 18160225 - 18160318
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  18160225 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 18160318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 12306816 - 12306909
Alignment:
Q  22 aatccgacttacctttgacattgtcgtgtaagccatataaatgataaacgcatctccaagctccataaagatggactattggaatcctttgatt 115  Q
    ||||| ||||||||||| ||||||||| || | ||||||||||| || ||||| ||||| ||||||||||||||| | ||||| || |||||||    
T  12306816 aatccaacttacctttggcattgtcgtttaggacatataaatgagaatcgcatttccaaactccataaagatggatttttggattcttttgatt 12306909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University