View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_1 (Length: 740)
Name: NF17318_low_1
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 723
Target Start/End: Original strand, 10195877 - 10196577
Alignment:
| Q |
16 |
aaaattatgccatttgatttgagataagaagagagagagatatgattatatacctgacatgttggtaacagaattccgaactcttctttcacagccatca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10195877 |
aaaattatgccatttgatttgagataagaagagagagagatatgattatatacctgacatgttggtaacagaattccgaactcttctttcacagccatca |
10195976 |
T |
|
| Q |
116 |
cagtccattttcacctttatttcaactgtctataagagnnnnnnnnnnnnnnnnnnnnnntcagaattttcttaagactaataagctcactattaatgag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10195977 |
cagtccattttcacctttatttcaactgtctataagagaaaaaagttgcaaaaaataaaatcagaattttcttaagactaataagctcactattaatgag |
10196076 |
T |
|
| Q |
216 |
ataggatacataggagctagtgaaaaacctgcatgggtttgtgtttcttttttggggtgacagtgaagtaatctgaaaggaaatctagagcacccatttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10196077 |
ataggatacataggagctagtgaaaaacctgcatgggtttgtgtttcttttttggggtgacagtgaagtaatctgaaaggaaatctagagcacccatttt |
10196176 |
T |
|
| Q |
316 |
cttatttcttgctcnnnnnnnngtgtaaagaaagaaatggattgggttagtacttgaaaagaaaaaggatgaaaaaggaggatgtatatgactatattat |
415 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10196177 |
cttatttcttgctcttttttt-gtgtaaagaaagaaatggattgggttagtacttgaaaagaaaaaggatggaaaaggaggatgtatatgactatattat |
10196275 |
T |
|
| Q |
416 |
ggttaccaaattatatacttttataaaggaattatggaactatggatgtgatttcggttactatatgtgcaacttgtgctaaaatttataatgcataaaa |
515 |
Q |
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| T |
10196276 |
ggttaccaaattatatacttttataaaggaattatggaactatggatgtgatttcggttactatatgtgcaacttgtgctaaaatt--taatgcataaaa |
10196373 |
T |
|
| Q |
516 |
taatgcttagacaattatttttcatttcatagtcatctcaa-nnnnnnnncatattgtctctaatcatgtatcttcccgcaaatatcggggtgaccccaa |
614 |
Q |
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||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10196374 |
taatgcttaaataattatt-----tttcatagtcatctcaatttttttttcatattgtctctaatcatgtatattcccgcaaatatcggggtgaccccaa |
10196468 |
T |
|
| Q |
615 |
ttcacaaatataattgaacattgaacttcctttgaacttttctacacaatatcatcttgatttgtatctgtctatgatagggatttgacaataagaatgt |
714 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
10196469 |
ttcacaaatataattgaacattgaacttcctttgaacttttctacacaatatcatcttgatctgtacctgtctatgatagggatttgacaataagaatgt |
10196568 |
T |
|
| Q |
715 |
tatgtggat |
723 |
Q |
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||||||||| |
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| T |
10196569 |
tatgtggat |
10196577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 10651177 - 10651113
Alignment:
| Q |
82 |
aacagaattccgaactcttctttcacagccatcacagtccattttcacctttatttcaactgtct |
146 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
10651177 |
aacagaattcctaactcttctttcacatccatcacagtccattttcaccttgatttcaaccgtct |
10651113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 31886871 - 31886816
Alignment:
| Q |
95 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtctataa |
150 |
Q |
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|||||||||||||| |||||||| |||||||| || || || |||||||||||||| |
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| T |
31886871 |
actcttctttcacacccatcacaatccattttgactttgatctcaactgtctataa |
31886816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 54328 - 54277
Alignment:
| Q |
95 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtct |
146 |
Q |
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|||||||||||||| ||||||||||||||| |||| ||||| ||||| |||| |
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| T |
54328 |
actcttctttcacaaccatcacagtccattctcacttttatctcaaccgtct |
54277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 2306684 - 2306629
Alignment:
| Q |
95 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtctataa |
150 |
Q |
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|||||||||||||| |||||||| |||||||| || || || |||||||||||||| |
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| T |
2306684 |
actcttctttcacacccatcacaatccattttgactttgatctcaactgtctataa |
2306629 |
T |
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