View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17318_low_11 (Length: 478)
Name: NF17318_low_11
Description: NF17318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17318_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 3006786 - 3006409
Alignment:
| Q |
1 |
caagttaccgagtggcaagaaggctattgatgtaaaatcgcactttagaatttcatgagcaatccctgaacaacttaatctagtagggctattctgatgg |
100 |
Q |
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| T |
3006786 |
caagttaccaagtggcaagaaggctgttgatgtaaaatcgcactttagaatttcatgagcaatccctgaacaacttaatctagtaggactattctgatgg |
3006687 |
T |
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| Q |
101 |
tgactagtgtggagataaaattgataggaggagcacaattagttatgtgtttaaggtacaaggagatcgtatctcatggccatataagaagcaattaatg |
200 |
Q |
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| T |
3006686 |
tgactagtgtggagataaaattgataggaggagcacaattagttatgtgtttaaggtacaaggagatcgtatctcatggccatataagaagcaattaatg |
3006587 |
T |
|
| Q |
201 |
gtttc-tttatcaagttatgaagaataatatgtagtaggatcttcaggtgcatgtcaagctaactactggctacaaaatgtgatggaagatttgacgata |
299 |
Q |
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| T |
3006586 |
gtttcttttatcaagttatgaagaataatatggagtaggatcttcagttgcatgtcaagctaactacgggctacaaaatgtgatggaagatttgacgata |
3006487 |
T |
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| Q |
300 |
aaactgaagcatcaagtaaaattattgattattgatatataacaagtatgctattgctaagaatcctatagattaagg |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3006486 |
aaactgaagcatcaagtaaaattattgattattgatatataacaagtatgctattgctaagaatcccatagattaagg |
3006409 |
T |
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